Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3906 and Atu3907 are separated by 35 nucleotides Atu3907 and Atu3908 are separated by 101 nucleotides
Atu3906: Atu3906 - nitrate ABC transporter ATPase, at 1,005,400 to 1,006,695
Atu3906
Atu3907: Atu3907 - two component response regulator, at 1,006,731 to 1,007,318
Atu3907
Atu3908: Atu3908 - GntR family transcriptional regulator, at 1,007,420 to 1,008,085
Atu3908
Position (kb)
1006
1007
1008 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1005.796 kb on + strand, within Atu3906 at 1005.846 kb on - strand, within Atu3906 at 1006.005 kb on + strand, within Atu3906 at 1006.019 kb on - strand, within Atu3906 at 1006.033 kb on + strand, within Atu3906 at 1006.033 kb on + strand, within Atu3906 at 1006.041 kb on - strand, within Atu3906 at 1006.114 kb on - strand, within Atu3906 at 1006.134 kb on + strand, within Atu3906 at 1006.204 kb on - strand, within Atu3906 at 1006.252 kb on + strand, within Atu3906 at 1006.381 kb on - strand, within Atu3906 at 1006.437 kb on + strand, within Atu3906 at 1006.499 kb on + strand, within Atu3906 at 1006.523 kb on - strand, within Atu3906 at 1006.524 kb on - strand, within Atu3906 at 1006.619 kb on + strand at 1006.627 kb on - strand at 1006.632 kb on + strand at 1006.655 kb on + strand at 1006.696 kb on + strand at 1006.696 kb on + strand at 1006.703 kb on + strand at 1006.711 kb on - strand at 1006.761 kb on + strand at 1006.817 kb on + strand, within Atu3907 at 1006.825 kb on - strand, within Atu3907 at 1006.857 kb on - strand, within Atu3907 at 1006.864 kb on + strand, within Atu3907 at 1006.864 kb on + strand, within Atu3907 at 1006.872 kb on - strand, within Atu3907 at 1006.872 kb on - strand, within Atu3907 at 1006.872 kb on - strand, within Atu3907 at 1006.872 kb on - strand, within Atu3907 at 1006.942 kb on + strand, within Atu3907 at 1006.961 kb on - strand, within Atu3907 at 1006.965 kb on + strand, within Atu3907 at 1007.013 kb on + strand, within Atu3907 at 1007.021 kb on + strand, within Atu3907 at 1007.077 kb on + strand, within Atu3907 at 1007.093 kb on + strand, within Atu3907 at 1007.093 kb on + strand, within Atu3907 at 1007.093 kb on + strand, within Atu3907 at 1007.101 kb on - strand, within Atu3907 at 1007.117 kb on - strand, within Atu3907 at 1007.159 kb on - strand, within Atu3907 at 1007.161 kb on + strand, within Atu3907 at 1007.185 kb on - strand, within Atu3907 at 1007.241 kb on + strand, within Atu3907 at 1007.254 kb on - strand, within Atu3907 at 1007.320 kb on - strand at 1007.331 kb on - strand at 1007.335 kb on - strand at 1007.427 kb on - strand at 1007.460 kb on - strand at 1007.522 kb on - strand, within Atu3908 at 1007.549 kb on - strand, within Atu3908 at 1007.578 kb on + strand, within Atu3908 at 1007.594 kb on - strand, within Atu3908 at 1007.647 kb on + strand, within Atu3908 at 1007.655 kb on - strand, within Atu3908 at 1007.655 kb on - strand, within Atu3908 at 1007.657 kb on + strand, within Atu3908 at 1007.657 kb on + strand, within Atu3908 at 1007.665 kb on - strand, within Atu3908 at 1007.665 kb on - strand, within Atu3908 at 1007.667 kb on - strand, within Atu3908 at 1007.707 kb on + strand, within Atu3908 at 1007.747 kb on + strand, within Atu3908 at 1007.811 kb on - strand, within Atu3908 at 1007.855 kb on - strand, within Atu3908 at 1007.908 kb on - strand, within Atu3908 at 1007.910 kb on + strand, within Atu3908 at 1007.924 kb on + strand, within Atu3908 at 1007.943 kb on + strand, within Atu3908 at 1007.965 kb on - strand, within Atu3908 at 1007.995 kb on + strand, within Atu3908 at 1008.034 kb on - strand at 1008.036 kb on + strand at 1008.036 kb on + strand at 1008.152 kb on + strand at 1008.155 kb on - strand at 1008.160 kb on - strand at 1008.160 kb on - strand at 1008.172 kb on - strand at 1008.172 kb on - strand at 1008.284 kb on + strand at 1008.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 1,005,796 + Atu3906 0.31 -0.3 1,005,846 - Atu3906 0.34 -1.2 1,006,005 + Atu3906 0.47 -0.2 1,006,019 - Atu3906 0.48 +0.3 1,006,033 + Atu3906 0.49 +1.0 1,006,033 + Atu3906 0.49 -0.7 1,006,041 - Atu3906 0.49 +0.4 1,006,114 - Atu3906 0.55 -0.2 1,006,134 + Atu3906 0.57 +1.0 1,006,204 - Atu3906 0.62 -1.2 1,006,252 + Atu3906 0.66 -0.9 1,006,381 - Atu3906 0.76 -0.9 1,006,437 + Atu3906 0.80 -1.1 1,006,499 + Atu3906 0.85 -0.0 1,006,523 - Atu3906 0.87 +0.0 1,006,524 - Atu3906 0.87 -2.5 1,006,619 + -0.6 1,006,627 - +0.9 1,006,632 + -0.1 1,006,655 + -0.6 1,006,696 + -0.1 1,006,696 + -0.0 1,006,703 + -1.1 1,006,711 - +0.9 1,006,761 + +0.4 1,006,817 + Atu3907 0.15 -0.3 1,006,825 - Atu3907 0.16 +0.4 1,006,857 - Atu3907 0.21 -0.7 1,006,864 + Atu3907 0.23 +1.8 1,006,864 + Atu3907 0.23 +1.0 1,006,872 - Atu3907 0.24 -0.7 1,006,872 - Atu3907 0.24 -1.1 1,006,872 - Atu3907 0.24 +0.5 1,006,872 - Atu3907 0.24 -1.9 1,006,942 + Atu3907 0.36 -0.6 1,006,961 - Atu3907 0.39 -1.8 1,006,965 + Atu3907 0.40 -2.1 1,007,013 + Atu3907 0.48 -0.2 1,007,021 + Atu3907 0.49 -1.2 1,007,077 + Atu3907 0.59 +0.6 1,007,093 + Atu3907 0.62 +0.7 1,007,093 + Atu3907 0.62 +0.3 1,007,093 + Atu3907 0.62 -0.2 1,007,101 - Atu3907 0.63 +0.2 1,007,117 - Atu3907 0.66 +0.1 1,007,159 - Atu3907 0.73 -0.3 1,007,161 + Atu3907 0.73 -0.4 1,007,185 - Atu3907 0.77 -0.3 1,007,241 + Atu3907 0.87 -0.2 1,007,254 - Atu3907 0.89 -0.4 1,007,320 - -0.4 1,007,331 - +0.9 1,007,335 - -1.1 1,007,427 - -2.2 1,007,460 - -0.4 1,007,522 - Atu3908 0.15 -2.7 1,007,549 - Atu3908 0.19 -2.2 1,007,578 + Atu3908 0.24 -1.0 1,007,594 - Atu3908 0.26 -2.6 1,007,647 + Atu3908 0.34 -4.5 1,007,655 - Atu3908 0.35 -2.1 1,007,655 - Atu3908 0.35 -1.7 1,007,657 + Atu3908 0.36 -3.0 1,007,657 + Atu3908 0.36 -3.1 1,007,665 - Atu3908 0.37 -3.2 1,007,665 - Atu3908 0.37 -2.1 1,007,667 - Atu3908 0.37 -5.7 1,007,707 + Atu3908 0.43 -0.2 1,007,747 + Atu3908 0.49 +1.8 1,007,811 - Atu3908 0.59 -0.2 1,007,855 - Atu3908 0.65 -2.2 1,007,908 - Atu3908 0.73 -0.6 1,007,910 + Atu3908 0.74 -4.4 1,007,924 + Atu3908 0.76 -1.5 1,007,943 + Atu3908 0.79 -1.5 1,007,965 - Atu3908 0.82 -2.8 1,007,995 + Atu3908 0.86 -4.3 1,008,034 - -3.5 1,008,036 + -0.8 1,008,036 + -0.8 1,008,152 + +0.1 1,008,155 - -2.0 1,008,160 - -0.4 1,008,160 - +0.2 1,008,172 - -1.0 1,008,172 - +0.5 1,008,284 + +0.4 1,008,292 - +0.7
Or see this region's nucleotide sequence