Experiment: Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6012 and Atu6013 are separated by 515 nucleotides Atu6013 and Atu6014 are separated by 482 nucleotides
Atu6012: Atu6012 - isopentenyl transferase, at 19,337 to 20,059
Atu6012
Atu6013: Atu6013 - 6a protein, at 20,575 to 21,135
Atu6013
Atu6014: Atu6014 - 6b protein, at 21,618 to 22,241
Atu6014
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.576 kb on + strand, within Atu6012 at 19.586 kb on + strand, within Atu6012 at 19.586 kb on + strand, within Atu6012 at 19.600 kb on + strand, within Atu6012 at 19.611 kb on + strand, within Atu6012 at 19.629 kb on + strand, within Atu6012 at 19.632 kb on + strand, within Atu6012 at 19.637 kb on - strand, within Atu6012 at 19.642 kb on + strand, within Atu6012 at 19.642 kb on + strand, within Atu6012 at 19.642 kb on + strand, within Atu6012 at 19.650 kb on - strand, within Atu6012 at 19.655 kb on + strand, within Atu6012 at 19.655 kb on + strand, within Atu6012 at 19.744 kb on + strand, within Atu6012 at 19.749 kb on + strand, within Atu6012 at 19.752 kb on - strand, within Atu6012 at 19.752 kb on - strand, within Atu6012 at 19.757 kb on - strand, within Atu6012 at 19.757 kb on - strand, within Atu6012 at 19.825 kb on + strand, within Atu6012 at 19.830 kb on + strand, within Atu6012 at 19.830 kb on + strand, within Atu6012 at 19.836 kb on + strand, within Atu6012 at 19.838 kb on - strand, within Atu6012 at 19.873 kb on - strand, within Atu6012 at 19.873 kb on - strand, within Atu6012 at 19.896 kb on + strand, within Atu6012 at 19.899 kb on - strand, within Atu6012 at 19.915 kb on + strand, within Atu6012 at 19.936 kb on - strand, within Atu6012 at 19.955 kb on + strand, within Atu6012 at 19.963 kb on - strand, within Atu6012 at 19.968 kb on - strand, within Atu6012 at 20.061 kb on - strand at 20.061 kb on - strand at 20.069 kb on + strand at 20.114 kb on - strand at 20.591 kb on + strand at 20.591 kb on + strand at 20.599 kb on - strand at 20.613 kb on + strand at 20.686 kb on - strand, within Atu6013 at 20.709 kb on - strand, within Atu6013 at 20.822 kb on + strand, within Atu6013 at 20.829 kb on + strand, within Atu6013 at 20.829 kb on + strand, within Atu6013 at 20.843 kb on + strand, within Atu6013 at 20.843 kb on + strand, within Atu6013 at 20.851 kb on - strand, within Atu6013 at 20.874 kb on - strand, within Atu6013 at 20.879 kb on + strand, within Atu6013 at 20.902 kb on - strand, within Atu6013 at 20.917 kb on + strand, within Atu6013 at 20.925 kb on - strand, within Atu6013 at 20.929 kb on + strand, within Atu6013 at 20.973 kb on + strand, within Atu6013 at 20.973 kb on + strand, within Atu6013 at 20.981 kb on - strand, within Atu6013 at 20.981 kb on - strand, within Atu6013 at 20.993 kb on + strand, within Atu6013 at 21.001 kb on - strand, within Atu6013 at 21.012 kb on - strand, within Atu6013 at 21.023 kb on + strand, within Atu6013 at 21.067 kb on + strand, within Atu6013 at 21.067 kb on + strand, within Atu6013 at 21.072 kb on + strand, within Atu6013 at 21.077 kb on + strand, within Atu6013 at 21.082 kb on + strand at 21.085 kb on - strand at 21.090 kb on - strand at 21.100 kb on + strand at 21.100 kb on + strand at 21.100 kb on + strand at 21.108 kb on - strand at 21.111 kb on + strand at 21.111 kb on + strand at 21.125 kb on - strand at 21.191 kb on - strand at 21.465 kb on - strand at 21.537 kb on + strand at 21.577 kb on + strand at 21.578 kb on - strand at 21.585 kb on - strand at 21.596 kb on + strand at 21.669 kb on - strand at 21.700 kb on + strand, within Atu6014 at 21.742 kb on + strand, within Atu6014 at 21.808 kb on + strand, within Atu6014 at 21.808 kb on + strand, within Atu6014 at 21.826 kb on - strand, within Atu6014 at 21.884 kb on + strand, within Atu6014 at 21.889 kb on + strand, within Atu6014 at 21.904 kb on + strand, within Atu6014 at 21.912 kb on - strand, within Atu6014 at 21.922 kb on - strand, within Atu6014 at 21.941 kb on - strand, within Atu6014 at 21.948 kb on - strand, within Atu6014 at 21.956 kb on + strand, within Atu6014 at 21.964 kb on - strand, within Atu6014 at 21.973 kb on + strand, within Atu6014 at 21.981 kb on + strand, within Atu6014 at 21.990 kb on + strand, within Atu6014 at 22.048 kb on + strand, within Atu6014 at 22.051 kb on - strand, within Atu6014 at 22.056 kb on - strand, within Atu6014 at 22.061 kb on + strand, within Atu6014 at 22.061 kb on - strand, within Atu6014 at 22.102 kb on - strand, within Atu6014
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 19,576 + Atu6012 0.33 +0.1 19,586 + Atu6012 0.34 -0.7 19,586 + Atu6012 0.34 +0.6 19,600 + Atu6012 0.36 +0.7 19,611 + Atu6012 0.38 +0.1 19,629 + Atu6012 0.40 +0.2 19,632 + Atu6012 0.41 +0.1 19,637 - Atu6012 0.41 +0.6 19,642 + Atu6012 0.42 -0.2 19,642 + Atu6012 0.42 -0.1 19,642 + Atu6012 0.42 +0.0 19,650 - Atu6012 0.43 +0.3 19,655 + Atu6012 0.44 +0.3 19,655 + Atu6012 0.44 +0.9 19,744 + Atu6012 0.56 -0.4 19,749 + Atu6012 0.57 -0.2 19,752 - Atu6012 0.57 +0.2 19,752 - Atu6012 0.57 +0.4 19,757 - Atu6012 0.58 +0.7 19,757 - Atu6012 0.58 -0.3 19,825 + Atu6012 0.67 +0.5 19,830 + Atu6012 0.68 +0.2 19,830 + Atu6012 0.68 -1.6 19,836 + Atu6012 0.69 -0.1 19,838 - Atu6012 0.69 +0.4 19,873 - Atu6012 0.74 -0.5 19,873 - Atu6012 0.74 +0.3 19,896 + Atu6012 0.77 +0.6 19,899 - Atu6012 0.78 +0.1 19,915 + Atu6012 0.80 -0.0 19,936 - Atu6012 0.83 -0.7 19,955 + Atu6012 0.85 +2.6 19,963 - Atu6012 0.87 +0.5 19,968 - Atu6012 0.87 -0.3 20,061 - -0.3 20,061 - -0.6 20,069 + +0.4 20,114 - -0.6 20,591 + -0.0 20,591 + -0.1 20,599 - +0.9 20,613 + -0.3 20,686 - Atu6013 0.20 -1.4 20,709 - Atu6013 0.24 +0.6 20,822 + Atu6013 0.44 -1.2 20,829 + Atu6013 0.45 +0.4 20,829 + Atu6013 0.45 +0.1 20,843 + Atu6013 0.48 -0.4 20,843 + Atu6013 0.48 -0.3 20,851 - Atu6013 0.49 +1.1 20,874 - Atu6013 0.53 -0.3 20,879 + Atu6013 0.54 +2.3 20,902 - Atu6013 0.58 -0.3 20,917 + Atu6013 0.61 -1.5 20,925 - Atu6013 0.62 +0.1 20,929 + Atu6013 0.63 -0.1 20,973 + Atu6013 0.71 -0.6 20,973 + Atu6013 0.71 +0.3 20,981 - Atu6013 0.72 +0.2 20,981 - Atu6013 0.72 +0.9 20,993 + Atu6013 0.75 -2.3 21,001 - Atu6013 0.76 -0.6 21,012 - Atu6013 0.78 -0.4 21,023 + Atu6013 0.80 +0.4 21,067 + Atu6013 0.88 -1.6 21,067 + Atu6013 0.88 +2.4 21,072 + Atu6013 0.89 -0.4 21,077 + Atu6013 0.89 -0.7 21,082 + +0.4 21,085 - +0.7 21,090 - +0.1 21,100 + +0.1 21,100 + +0.5 21,100 + -0.9 21,108 - -0.0 21,111 + -0.2 21,111 + -1.1 21,125 - +0.3 21,191 - -1.2 21,465 - -0.1 21,537 + -2.6 21,577 + -1.0 21,578 - -1.1 21,585 - -0.2 21,596 + -2.7 21,669 - -1.4 21,700 + Atu6014 0.13 +0.3 21,742 + Atu6014 0.20 -0.8 21,808 + Atu6014 0.30 -1.8 21,808 + Atu6014 0.30 -3.4 21,826 - Atu6014 0.33 -1.1 21,884 + Atu6014 0.43 -1.1 21,889 + Atu6014 0.43 -0.5 21,904 + Atu6014 0.46 -1.0 21,912 - Atu6014 0.47 -0.1 21,922 - Atu6014 0.49 +1.4 21,941 - Atu6014 0.52 -0.7 21,948 - Atu6014 0.53 -1.3 21,956 + Atu6014 0.54 +0.0 21,964 - Atu6014 0.55 +1.1 21,973 + Atu6014 0.57 +2.0 21,981 + Atu6014 0.58 -1.1 21,990 + Atu6014 0.60 +0.4 22,048 + Atu6014 0.69 -1.5 22,051 - Atu6014 0.69 -1.0 22,056 - Atu6014 0.70 -0.3 22,061 + Atu6014 0.71 +0.2 22,061 - Atu6014 0.71 +0.2 22,102 - Atu6014 0.78 +0.8
Or see this region's nucleotide sequence