Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04085 and PS417_04090 are separated by 90 nucleotides PS417_04090 and PS417_04095 are separated by 205 nucleotides
PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859
_04085
PS417_04090: PS417_04090 - hypothetical protein, at 919,950 to 920,663
_04090
PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131
_04095
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 918.976 kb on + strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 919.050 kb on - strand, within PS417_04085 at 919.174 kb on + strand, within PS417_04085 at 919.193 kb on - strand, within PS417_04085 at 919.301 kb on - strand, within PS417_04085 at 919.445 kb on - strand, within PS417_04085 at 919.462 kb on + strand, within PS417_04085 at 919.597 kb on + strand, within PS417_04085 at 919.772 kb on - strand at 919.772 kb on - strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 920.075 kb on - strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.213 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.573 kb on - strand, within PS417_04090 at 920.679 kb on + strand at 920.700 kb on + strand at 920.701 kb on - strand at 920.826 kb on + strand at 921.184 kb on + strand, within PS417_04095 at 921.268 kb on + strand, within PS417_04095
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 918,976 + PS417_04085 0.45 +0.3 918,977 - PS417_04085 0.45 -1.7 918,977 - PS417_04085 0.45 +0.4 918,977 - PS417_04085 0.45 -0.2 919,050 - PS417_04085 0.49 +0.0 919,174 + PS417_04085 0.57 -1.4 919,193 - PS417_04085 0.58 -0.1 919,301 - PS417_04085 0.65 -0.8 919,445 - PS417_04085 0.74 +0.2 919,462 + PS417_04085 0.75 -0.1 919,597 + PS417_04085 0.84 -1.6 919,772 - -0.5 919,772 - +2.0 919,883 + -0.6 919,883 + -1.3 919,883 + +1.0 919,883 + -0.2 919,883 + -0.1 919,883 + +0.6 919,884 - +0.7 919,884 - +1.0 919,884 - -1.9 919,884 - -0.1 919,884 - +0.1 919,884 - +0.3 919,887 + -1.2 919,887 + -1.8 919,887 + -0.8 919,887 + -1.1 919,887 + -0.7 919,888 - +0.8 919,888 - -0.8 919,888 - +1.0 919,888 - +3.2 919,888 - -0.0 919,888 - -1.0 920,075 - PS417_04090 0.18 -1.5 920,122 + PS417_04090 0.24 -2.0 920,122 + PS417_04090 0.24 -0.4 920,213 + PS417_04090 0.37 -0.5 920,572 + PS417_04090 0.87 -0.8 920,572 + PS417_04090 0.87 -0.1 920,573 - PS417_04090 0.87 -1.6 920,679 + -0.0 920,700 + -0.4 920,701 - +2.1 920,826 + -0.4 921,184 + PS417_04095 0.25 +0.0 921,268 + PS417_04095 0.32 -1.7
Or see this region's nucleotide sequence