Experiment: Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3279 and Atu3280 are separated by 101 nucleotides Atu3280 and Atu3281 are separated by 334 nucleotides
Atu3279: Atu3279 - methanesulfonate sulfonatase, at 303,922 to 305,079
Atu3279
Atu3280: Atu3280 - GntR family transcriptional regulator, at 305,181 to 305,885
Atu3280
Atu3281: Atu3281 - ABC transporter permease, at 306,220 to 307,296
Atu3281
Position (kb) 305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 304.312 kb on - strand, within Atu3279 at 304.380 kb on - strand, within Atu3279 at 304.385 kb on - strand, within Atu3279 at 304.591 kb on - strand, within Atu3279 at 304.591 kb on - strand, within Atu3279 at 304.619 kb on - strand, within Atu3279 at 304.656 kb on + strand, within Atu3279 at 304.685 kb on - strand, within Atu3279 at 304.842 kb on + strand, within Atu3279 at 304.850 kb on - strand, within Atu3279 at 304.903 kb on - strand, within Atu3279 at 304.949 kb on - strand, within Atu3279 at 305.052 kb on - strand at 305.065 kb on - strand at 305.089 kb on + strand at 305.304 kb on + strand, within Atu3280 at 305.304 kb on + strand, within Atu3280 at 305.438 kb on - strand, within Atu3280 at 305.440 kb on + strand, within Atu3280 at 305.448 kb on - strand, within Atu3280 at 305.656 kb on + strand, within Atu3280 at 305.770 kb on + strand, within Atu3280 at 305.773 kb on + strand, within Atu3280 at 305.773 kb on + strand, within Atu3280 at 305.813 kb on - strand, within Atu3280 at 305.813 kb on - strand, within Atu3280 at 305.951 kb on - strand at 306.153 kb on + strand at 306.153 kb on + strand at 306.167 kb on - strand at 306.178 kb on - strand at 306.200 kb on + strand at 306.252 kb on + strand at 306.252 kb on + strand at 306.281 kb on - strand at 306.321 kb on + strand at 306.483 kb on + strand, within Atu3281 at 306.523 kb on - strand, within Atu3281 at 306.523 kb on - strand, within Atu3281 at 306.541 kb on + strand, within Atu3281 at 306.598 kb on - strand, within Atu3281 at 306.659 kb on + strand, within Atu3281 at 306.710 kb on - strand, within Atu3281 at 306.799 kb on - strand, within Atu3281 at 306.801 kb on + strand, within Atu3281 at 306.809 kb on - strand, within Atu3281 at 306.830 kb on + strand, within Atu3281 at 306.861 kb on + strand, within Atu3281 at 306.861 kb on + strand, within Atu3281 at 306.869 kb on - strand, within Atu3281 at 306.869 kb on - strand, within Atu3281 at 306.869 kb on - strand, within Atu3281 at 306.869 kb on - strand, within Atu3281
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 304,312 - Atu3279 0.34 -1.2 304,380 - Atu3279 0.40 -1.2 304,385 - Atu3279 0.40 -1.0 304,591 - Atu3279 0.58 -0.5 304,591 - Atu3279 0.58 +0.2 304,619 - Atu3279 0.60 +0.6 304,656 + Atu3279 0.63 -2.0 304,685 - Atu3279 0.66 -0.9 304,842 + Atu3279 0.79 -2.1 304,850 - Atu3279 0.80 -0.2 304,903 - Atu3279 0.85 -0.5 304,949 - Atu3279 0.89 -0.5 305,052 - -0.6 305,065 - -0.4 305,089 + +1.5 305,304 + Atu3280 0.17 -0.2 305,304 + Atu3280 0.17 -1.6 305,438 - Atu3280 0.36 -0.6 305,440 + Atu3280 0.37 -0.4 305,448 - Atu3280 0.38 -1.9 305,656 + Atu3280 0.67 -0.3 305,770 + Atu3280 0.84 -0.7 305,773 + Atu3280 0.84 -1.5 305,773 + Atu3280 0.84 -1.4 305,813 - Atu3280 0.90 -0.4 305,813 - Atu3280 0.90 -1.6 305,951 - -0.5 306,153 + -0.2 306,153 + +1.1 306,167 - -2.8 306,178 - -0.1 306,200 + -0.8 306,252 + +0.1 306,252 + -0.7 306,281 - -0.4 306,321 + -0.6 306,483 + Atu3281 0.24 -0.2 306,523 - Atu3281 0.28 +1.7 306,523 - Atu3281 0.28 -1.0 306,541 + Atu3281 0.30 +1.1 306,598 - Atu3281 0.35 -0.2 306,659 + Atu3281 0.41 -0.4 306,710 - Atu3281 0.45 +0.7 306,799 - Atu3281 0.54 +0.0 306,801 + Atu3281 0.54 -0.1 306,809 - Atu3281 0.55 -0.5 306,830 + Atu3281 0.57 -0.1 306,861 + Atu3281 0.60 +0.1 306,861 + Atu3281 0.60 -0.3 306,869 - Atu3281 0.60 +0.0 306,869 - Atu3281 0.60 +0.0 306,869 - Atu3281 0.60 +0.2 306,869 - Atu3281 0.60 +0.7
Or see this region's nucleotide sequence