Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04360 and PS417_04365 are separated by 8 nucleotides PS417_04365 and PS417_04370 are separated by 0 nucleotides PS417_04370 and PS417_04375 are separated by 298 nucleotides
PS417_04360: PS417_04360 - lipopolysaccharide ABC transporter permease, at 973,981 to 974,553
_04360
PS417_04365: PS417_04365 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 974,562 to 975,086
_04365
PS417_04370: PS417_04370 - D-arabinose 5-phosphate isomerase, at 975,087 to 976,061
_04370
PS417_04375: PS417_04375 - ABC transporter ATP-binding protein, at 976,360 to 977,169
_04375
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1 at 974.564 kb on - strand at 974.566 kb on - strand at 974.566 kb on - strand at 974.566 kb on - strand at 974.780 kb on - strand, within PS417_04365 at 974.785 kb on - strand, within PS417_04365 at 975.089 kb on - strand at 976.074 kb on - strand at 976.076 kb on - strand at 976.076 kb on - strand at 976.244 kb on - strand at 976.245 kb on + strand at 976.245 kb on + strand at 976.246 kb on - strand at 976.246 kb on - strand at 976.287 kb on + strand at 976.287 kb on + strand at 976.287 kb on + strand at 976.288 kb on - strand at 976.357 kb on + strand at 976.434 kb on + strand at 976.617 kb on + strand, within PS417_04375 at 976.618 kb on - strand, within PS417_04375 at 976.755 kb on - strand, within PS417_04375 at 976.862 kb on - strand, within PS417_04375 at 977.000 kb on - strand, within PS417_04375 at 977.006 kb on - strand, within PS417_04375
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 974,564 - -1.6 974,566 - -1.1 974,566 - +0.6 974,566 - +0.4 974,780 - PS417_04365 0.42 -0.7 974,785 - PS417_04365 0.42 -2.6 975,089 - +1.2 976,074 - -1.2 976,076 - -1.6 976,076 - +0.4 976,244 - -0.7 976,245 + +1.7 976,245 + +1.3 976,246 - -1.2 976,246 - -0.7 976,287 + -0.6 976,287 + -2.1 976,287 + -1.1 976,288 - -1.2 976,357 + -1.1 976,434 + -1.1 976,617 + PS417_04375 0.32 +0.8 976,618 - PS417_04375 0.32 -0.5 976,755 - PS417_04375 0.49 -2.3 976,862 - PS417_04375 0.62 -1.8 977,000 - PS417_04375 0.79 -0.9 977,006 - PS417_04375 0.80 +0.1
Or see this region's nucleotide sequence