Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02710 and PS417_02715 are separated by 276 nucleotides PS417_02715 and PS417_02720 are separated by 5 nucleotides PS417_02720 and PS417_02725 are separated by 150 nucleotides PS417_02725 and PS417_02730 are separated by 359 nucleotides
PS417_02710: PS417_02710 - Urease maturation and nickel insertion protein UreE <small>(from data)</small>, at 618,856 to 619,356
_02710
PS417_02715: PS417_02715 - hypothetical protein, at 619,633 to 620,130
_02715
PS417_02720: PS417_02720 - TetR family transcriptional regulator, at 620,136 to 620,768
_02720
PS417_02725: PS417_02725 - hypothetical protein, at 620,919 to 621,371
_02725
PS417_02730: PS417_02730 - hypothetical protein, at 621,731 to 623,800
_02730
Position (kb) 620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 619.163 kb on - strand, within PS417_02710 at 619.372 kb on + strand at 619.373 kb on - strand at 619.390 kb on + strand at 619.391 kb on - strand at 619.391 kb on - strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.580 kb on - strand at 619.595 kb on - strand at 619.595 kb on - strand at 619.613 kb on - strand at 619.613 kb on - strand at 619.670 kb on + strand at 619.670 kb on + strand at 619.785 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.793 kb on - strand, within PS417_02715 at 619.793 kb on - strand at 619.849 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.005 kb on + strand, within PS417_02715 at 620.006 kb on - strand, within PS417_02715 at 620.006 kb on - strand, within PS417_02715 at 620.007 kb on + strand, within PS417_02715 at 620.008 kb on - strand, within PS417_02715 at 620.008 kb on - strand, within PS417_02715 at 620.009 kb on + strand, within PS417_02715 at 620.009 kb on + strand, within PS417_02715 at 620.010 kb on - strand, within PS417_02715 at 620.080 kb on + strand, within PS417_02715 at 620.081 kb on - strand at 620.095 kb on + strand at 620.095 kb on + strand at 620.095 kb on + strand at 620.138 kb on - strand at 620.183 kb on + strand at 620.183 kb on + strand at 620.183 kb on + strand at 620.184 kb on - strand at 620.184 kb on - strand at 620.583 kb on + strand at 620.642 kb on + strand, within PS417_02720 at 620.809 kb on - strand at 620.921 kb on - strand at 620.921 kb on - strand at 621.154 kb on + strand, within PS417_02725 at 621.209 kb on - strand, within PS417_02725 at 621.336 kb on - strand at 621.340 kb on - strand at 621.357 kb on + strand at 621.440 kb on - strand at 621.465 kb on - strand at 621.563 kb on - strand at 621.675 kb on + strand at 621.676 kb on - strand at 621.676 kb on - strand at 621.677 kb on + strand at 621.678 kb on - strand at 621.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 619,163 - PS417_02710 0.61 -0.7 619,372 + +0.4 619,373 - -2.5 619,390 + +0.9 619,391 - +0.1 619,391 - +0.3 619,436 + -0.5 619,436 + +0.9 619,436 + -0.3 619,436 + +0.5 619,579 + +0.1 619,579 + +0.3 619,579 + +0.6 619,580 - -0.2 619,595 - +0.9 619,595 - +1.7 619,613 - +0.6 619,613 - -1.3 619,670 + +0.1 619,670 + -0.1 619,785 + PS417_02715 0.31 +2.0 619,792 + PS417_02715 0.32 +0.5 619,792 + PS417_02715 0.32 +2.0 619,793 - PS417_02715 0.32 -0.2 619,793 - +3.6 619,849 + PS417_02715 0.43 +0.4 620,005 + PS417_02715 0.75 +0.0 620,005 + PS417_02715 0.75 +1.9 620,005 + PS417_02715 0.75 +0.2 620,005 + PS417_02715 0.75 -1.1 620,005 + PS417_02715 0.75 +0.1 620,005 + PS417_02715 0.75 -0.1 620,005 + PS417_02715 0.75 +0.1 620,005 + PS417_02715 0.75 +2.6 620,006 - PS417_02715 0.75 -1.7 620,006 - PS417_02715 0.75 +1.2 620,007 + PS417_02715 0.75 -0.1 620,008 - PS417_02715 0.75 +0.2 620,008 - PS417_02715 0.75 -1.0 620,009 + PS417_02715 0.76 +2.8 620,009 + PS417_02715 0.76 +0.2 620,010 - PS417_02715 0.76 +0.7 620,080 + PS417_02715 0.90 -1.4 620,081 - +0.2 620,095 + -0.2 620,095 + -3.1 620,095 + -0.5 620,138 - +0.8 620,183 + -0.2 620,183 + -0.9 620,183 + +0.1 620,184 - +0.4 620,184 - -1.8 620,583 + -0.7 620,642 + PS417_02720 0.80 -2.1 620,809 - +1.0 620,921 - +0.6 620,921 - +2.9 621,154 + PS417_02725 0.52 +0.5 621,209 - PS417_02725 0.64 -0.6 621,336 - +0.0 621,340 - +0.5 621,357 + -1.8 621,440 - +0.4 621,465 - -0.5 621,563 - +1.4 621,675 + +1.1 621,676 - +0.0 621,676 - +0.5 621,677 + -0.4 621,678 - -0.5 621,678 - +0.0
Or see this region's nucleotide sequence