Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27205 and PS417_27210 are separated by 104 nucleotides PS417_27210 and PS417_27215 are separated by 127 nucleotides PS417_27215 and PS417_27220 are separated by 84 nucleotides
PS417_27205: PS417_27205 - adenylate cyclase, at 5,873,798 to 5,875,165
_27205
PS417_27210: PS417_27210 - AsnC family transcriptional regulator, at 5,875,270 to 5,875,740
_27210
PS417_27215: PS417_27215 - hypothetical protein, at 5,875,868 to 5,876,206
_27215
PS417_27220: PS417_27220 - type II secretion system protein E, at 5,876,291 to 5,877,970
_27220
Position (kb) 5875
5876
5877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5875.037 kb on + strand at 5875.037 kb on + strand at 5875.127 kb on + strand at 5875.128 kb on - strand at 5875.219 kb on + strand at 5875.219 kb on + strand at 5875.220 kb on - strand at 5875.382 kb on + strand, within PS417_27210 at 5875.382 kb on + strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand at 5875.442 kb on + strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.742 kb on + strand at 5875.808 kb on - strand at 5875.889 kb on + strand at 5875.998 kb on - strand, within PS417_27215 at 5876.152 kb on + strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.217 kb on + strand at 5876.217 kb on + strand at 5876.218 kb on - strand at 5876.218 kb on - strand at 5876.251 kb on - strand at 5876.262 kb on + strand at 5876.489 kb on + strand, within PS417_27220 at 5876.489 kb on + strand, within PS417_27220 at 5876.490 kb on - strand, within PS417_27220 at 5876.705 kb on - strand, within PS417_27220 at 5876.941 kb on + strand, within PS417_27220 at 5876.967 kb on - strand, within PS417_27220 at 5876.997 kb on + strand, within PS417_27220 at 5877.103 kb on - strand, within PS417_27220
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,875,037 + +0.7 5,875,037 + -2.2 5,875,127 + -2.9 5,875,128 - +0.2 5,875,219 + -0.4 5,875,219 + +0.9 5,875,220 - -1.2 5,875,382 + PS417_27210 0.24 -0.6 5,875,382 + PS417_27210 0.24 -3.4 5,875,383 - PS417_27210 0.24 -0.3 5,875,383 - PS417_27210 0.24 +1.1 5,875,442 + PS417_27210 0.37 +1.0 5,875,442 + PS417_27210 0.37 -0.1 5,875,442 + +1.8 5,875,442 + PS417_27210 0.37 -2.5 5,875,443 - PS417_27210 0.37 -2.2 5,875,443 - PS417_27210 0.37 +0.3 5,875,742 + +0.7 5,875,808 - -0.4 5,875,889 + -0.4 5,875,998 - PS417_27215 0.38 -2.4 5,876,152 + PS417_27215 0.84 -1.1 5,876,153 - PS417_27215 0.84 -0.2 5,876,153 - PS417_27215 0.84 -0.4 5,876,217 + -0.5 5,876,217 + -3.0 5,876,218 - +0.5 5,876,218 - -1.3 5,876,251 - -0.3 5,876,262 + -1.2 5,876,489 + PS417_27220 0.12 -1.7 5,876,489 + PS417_27220 0.12 +0.3 5,876,490 - PS417_27220 0.12 +2.3 5,876,705 - PS417_27220 0.25 -0.4 5,876,941 + PS417_27220 0.39 -0.1 5,876,967 - PS417_27220 0.40 +0.4 5,876,997 + PS417_27220 0.42 +0.6 5,877,103 - PS417_27220 0.48 +0.6
Or see this region's nucleotide sequence