Strain Fitness in Pseudomonas simiae WCS417 around PS417_01285

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01275 and PS417_01280 are separated by 132 nucleotidesPS417_01280 and PS417_01285 are separated by 141 nucleotidesPS417_01285 and PS417_01290 are separated by 87 nucleotidesPS417_01290 and PS417_01295 overlap by 4 nucleotides PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770 _01275 PS417_01280: PS417_01280 - peptidoglycan-binding protein LysM, at 278,903 to 279,343 _01280 PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147 _01285 PS417_01290: PS417_01290 - ADP-ribose diphosphatase, at 280,235 to 280,801 _01290 PS417_01295: PS417_01295 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 280,798 to 281,634 _01295 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2at 278.548 kb on - strand, within PS417_01275at 278.808 kb on + strandat 278.902 kb on + strandat 278.902 kb on + strandat 278.903 kb on - strandat 278.908 kb on + strandat 279.159 kb on + strand, within PS417_01280at 279.223 kb on + strand, within PS417_01280at 279.258 kb on - strand, within PS417_01280at 279.258 kb on - strand, within PS417_01280at 279.342 kb on - strandat 279.420 kb on - strandat 279.511 kb on - strandat 279.949 kb on - strand, within PS417_01285at 279.971 kb on - strand, within PS417_01285at 280.162 kb on + strandat 280.162 kb on + strandat 280.162 kb on + strandat 280.163 kb on - strandat 280.166 kb on + strandat 280.166 kb on + strandat 280.167 kb on - strandat 280.167 kb on - strandat 280.203 kb on + strandat 280.205 kb on + strandat 280.206 kb on - strandat 280.206 kb on - strandat 280.269 kb on + strandat 280.430 kb on + strand, within PS417_01290at 280.452 kb on - strand, within PS417_01290at 280.754 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
278,548 - PS417_01275 0.75 +1.2
278,808 + +0.5
278,902 + -0.7
278,902 + +0.5
278,903 - +0.7
278,908 + +0.5
279,159 + PS417_01280 0.58 +0.2
279,223 + PS417_01280 0.73 +0.6
279,258 - PS417_01280 0.80 +0.5
279,258 - PS417_01280 0.80 -2.2
279,342 - -0.3
279,420 - -0.2
279,511 - +0.7
279,949 - PS417_01285 0.70 -2.2
279,971 - PS417_01285 0.73 -1.2
280,162 + -2.3
280,162 + +0.4
280,162 + -0.3
280,163 - +2.2
280,166 + -2.3
280,166 + -0.5
280,167 - +0.7
280,167 - +2.3
280,203 + -0.3
280,205 + -0.4
280,206 - +0.1
280,206 - +0.5
280,269 + -0.9
280,430 + PS417_01290 0.34 +2.3
280,452 - PS417_01290 0.38 +0.3
280,754 + -0.9

Or see this region's nucleotide sequence