Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06890 and PS417_06895 are separated by 105 nucleotides PS417_06895 and PS417_06900 are separated by 139 nucleotides PS417_06900 and PS417_06905 are separated by 123 nucleotides
PS417_06890: PS417_06890 - aldolase, at 1,525,339 to 1,526,121
_06890
PS417_06895: PS417_06895 - DNA-binding protein, at 1,526,227 to 1,526,754
_06895
PS417_06900: PS417_06900 - hypothetical protein, at 1,526,894 to 1,527,910
_06900
PS417_06905: PS417_06905 - alcohol dehydrogenase, at 1,528,034 to 1,529,182
_06905
Position (kb) 1526
1527
1528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1525.925 kb on + strand, within PS417_06890 at 1525.926 kb on - strand, within PS417_06890 at 1525.928 kb on + strand, within PS417_06890 at 1525.929 kb on - strand, within PS417_06890 at 1525.929 kb on - strand, within PS417_06890 at 1526.040 kb on + strand, within PS417_06890 at 1526.040 kb on + strand, within PS417_06890 at 1526.041 kb on - strand, within PS417_06890 at 1526.041 kb on - strand at 1526.108 kb on - strand at 1526.268 kb on + strand at 1526.311 kb on + strand, within PS417_06895 at 1526.311 kb on + strand, within PS417_06895 at 1526.312 kb on - strand, within PS417_06895 at 1526.312 kb on - strand, within PS417_06895 at 1526.435 kb on - strand, within PS417_06895 at 1526.533 kb on + strand, within PS417_06895 at 1526.534 kb on - strand, within PS417_06895 at 1527.095 kb on - strand, within PS417_06900 at 1527.159 kb on + strand, within PS417_06900 at 1527.174 kb on + strand, within PS417_06900 at 1527.376 kb on + strand, within PS417_06900 at 1527.462 kb on + strand, within PS417_06900 at 1527.478 kb on - strand, within PS417_06900 at 1527.478 kb on - strand, within PS417_06900 at 1527.501 kb on + strand, within PS417_06900 at 1527.502 kb on - strand, within PS417_06900 at 1527.581 kb on - strand, within PS417_06900 at 1527.581 kb on - strand, within PS417_06900 at 1527.787 kb on - strand, within PS417_06900 at 1528.012 kb on - strand at 1528.012 kb on - strand at 1528.012 kb on - strand at 1528.115 kb on + strand at 1528.115 kb on + strand at 1528.223 kb on + strand, within PS417_06905 at 1528.223 kb on + strand, within PS417_06905 at 1528.224 kb on - strand, within PS417_06905 at 1528.637 kb on + strand, within PS417_06905 at 1528.637 kb on + strand, within PS417_06905 at 1528.637 kb on + strand, within PS417_06905 at 1528.638 kb on - strand, within PS417_06905 at 1528.638 kb on - strand, within PS417_06905
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,525,925 + PS417_06890 0.75 +1.6 1,525,926 - PS417_06890 0.75 -0.1 1,525,928 + PS417_06890 0.75 +2.1 1,525,929 - PS417_06890 0.75 +0.8 1,525,929 - PS417_06890 0.75 +1.0 1,526,040 + PS417_06890 0.90 -1.8 1,526,040 + PS417_06890 0.90 -2.5 1,526,041 - PS417_06890 0.90 -1.0 1,526,041 - +0.6 1,526,108 - +0.4 1,526,268 + -1.9 1,526,311 + PS417_06895 0.16 +1.7 1,526,311 + PS417_06895 0.16 -2.8 1,526,312 - PS417_06895 0.16 -0.2 1,526,312 - PS417_06895 0.16 +1.0 1,526,435 - PS417_06895 0.39 +0.1 1,526,533 + PS417_06895 0.58 +0.5 1,526,534 - PS417_06895 0.58 +0.5 1,527,095 - PS417_06900 0.20 -1.1 1,527,159 + PS417_06900 0.26 -0.2 1,527,174 + PS417_06900 0.28 -0.8 1,527,376 + PS417_06900 0.47 -0.1 1,527,462 + PS417_06900 0.56 -0.3 1,527,478 - PS417_06900 0.57 +0.7 1,527,478 - PS417_06900 0.57 +0.1 1,527,501 + PS417_06900 0.60 -1.1 1,527,502 - PS417_06900 0.60 -0.5 1,527,581 - PS417_06900 0.68 -1.8 1,527,581 - PS417_06900 0.68 -0.1 1,527,787 - PS417_06900 0.88 -1.0 1,528,012 - +0.2 1,528,012 - +0.9 1,528,012 - -1.3 1,528,115 + -0.3 1,528,115 + -0.4 1,528,223 + PS417_06905 0.16 -0.2 1,528,223 + PS417_06905 0.16 -1.2 1,528,224 - PS417_06905 0.17 -0.3 1,528,637 + PS417_06905 0.52 +1.2 1,528,637 + PS417_06905 0.52 +0.3 1,528,637 + PS417_06905 0.52 +0.6 1,528,638 - PS417_06905 0.53 -0.2 1,528,638 - PS417_06905 0.53 -0.9
Or see this region's nucleotide sequence