Experiment: Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6029 and Atu6030 are separated by 3 nucleotides Atu6030 and Atu6031 overlap by 4 nucleotides Atu6031 and Atu6032 are separated by 12 nucleotides Atu6032 and Atu6033 overlap by 1 nucleotides
Atu6029: Atu6029 - transcriptional regulator, LysR family for nopaline metabolism, at 40,362 to 41,210
Atu6029
Atu6030: Atu6030 - ORF13 hypothetical protein, at 41,214 to 41,573
Atu6030
Atu6031: Atu6031 - conjugal transfer protein, at 41,570 to 42,886
Atu6031
Atu6032: Atu6032 - conjugal transfer protein, at 42,899 to 43,375
Atu6032
Atu6033: Atu6033 - conjugal transfer protein, at 43,375 to 44,229
Atu6033
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 40.598 kb on + strand, within Atu6029 at 40.598 kb on + strand, within Atu6029 at 40.598 kb on + strand, within Atu6029 at 40.600 kb on + strand, within Atu6029 at 40.622 kb on - strand, within Atu6029 at 40.682 kb on + strand, within Atu6029 at 40.728 kb on - strand, within Atu6029 at 40.760 kb on + strand, within Atu6029 at 40.760 kb on + strand, within Atu6029 at 40.765 kb on + strand, within Atu6029 at 40.773 kb on - strand, within Atu6029 at 40.773 kb on - strand, within Atu6029 at 40.783 kb on + strand, within Atu6029 at 40.827 kb on - strand, within Atu6029 at 40.903 kb on + strand, within Atu6029 at 40.911 kb on - strand, within Atu6029 at 40.929 kb on + strand, within Atu6029 at 40.929 kb on + strand, within Atu6029 at 40.929 kb on + strand, within Atu6029 at 40.932 kb on + strand, within Atu6029 at 40.938 kb on - strand, within Atu6029 at 40.947 kb on - strand, within Atu6029 at 40.965 kb on + strand, within Atu6029 at 40.985 kb on + strand, within Atu6029 at 40.998 kb on + strand, within Atu6029 at 41.006 kb on - strand, within Atu6029 at 41.008 kb on + strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.054 kb on - strand, within Atu6029 at 41.070 kb on + strand, within Atu6029 at 41.080 kb on + strand, within Atu6029 at 41.080 kb on + strand, within Atu6029 at 41.080 kb on + strand, within Atu6029 at 41.088 kb on - strand, within Atu6029 at 41.088 kb on - strand, within Atu6029 at 41.179 kb on - strand at 41.195 kb on + strand at 41.195 kb on - strand at 41.259 kb on - strand, within Atu6030 at 41.259 kb on - strand, within Atu6030 at 41.275 kb on + strand, within Atu6030 at 41.292 kb on - strand, within Atu6030 at 41.325 kb on - strand, within Atu6030 at 41.351 kb on - strand, within Atu6030 at 41.387 kb on - strand, within Atu6030 at 41.487 kb on + strand, within Atu6030 at 41.502 kb on + strand, within Atu6030 at 41.502 kb on + strand, within Atu6030 at 41.521 kb on + strand, within Atu6030 at 41.529 kb on - strand, within Atu6030 at 41.533 kb on - strand, within Atu6030 at 41.534 kb on - strand, within Atu6030 at 41.540 kb on + strand at 41.636 kb on + strand at 41.649 kb on + strand at 41.741 kb on - strand, within Atu6031 at 41.766 kb on + strand, within Atu6031 at 41.770 kb on + strand, within Atu6031 at 41.814 kb on - strand, within Atu6031 at 41.862 kb on + strand, within Atu6031 at 41.862 kb on + strand, within Atu6031 at 41.870 kb on - strand, within Atu6031 at 41.870 kb on - strand, within Atu6031 at 41.905 kb on - strand, within Atu6031 at 41.924 kb on + strand, within Atu6031 at 41.962 kb on - strand, within Atu6031 at 41.972 kb on - strand, within Atu6031 at 42.003 kb on - strand, within Atu6031 at 42.003 kb on - strand, within Atu6031 at 42.046 kb on + strand, within Atu6031 at 42.046 kb on - strand, within Atu6031 at 42.064 kb on - strand, within Atu6031 at 42.071 kb on - strand, within Atu6031 at 42.101 kb on + strand, within Atu6031 at 42.115 kb on + strand, within Atu6031 at 42.151 kb on + strand, within Atu6031 at 42.159 kb on - strand, within Atu6031 at 42.187 kb on + strand, within Atu6031 at 42.195 kb on - strand, within Atu6031 at 42.264 kb on - strand, within Atu6031 at 42.276 kb on + strand, within Atu6031 at 42.276 kb on + strand, within Atu6031 at 42.283 kb on + strand, within Atu6031 at 42.298 kb on + strand, within Atu6031 at 42.300 kb on - strand, within Atu6031 at 42.309 kb on + strand, within Atu6031 at 42.398 kb on + strand, within Atu6031 at 42.398 kb on + strand, within Atu6031 at 42.406 kb on - strand, within Atu6031 at 42.458 kb on + strand, within Atu6031 at 42.500 kb on - strand, within Atu6031 at 42.591 kb on + strand, within Atu6031 at 42.625 kb on + strand, within Atu6031 at 42.649 kb on + strand, within Atu6031 at 42.655 kb on - strand, within Atu6031 at 42.655 kb on - strand, within Atu6031 at 42.660 kb on + strand, within Atu6031 at 42.660 kb on + strand, within Atu6031 at 42.668 kb on - strand, within Atu6031 at 42.680 kb on + strand, within Atu6031 at 42.745 kb on + strand, within Atu6031 at 42.856 kb on - strand at 42.856 kb on - strand at 42.894 kb on - strand at 42.894 kb on - strand at 42.916 kb on - strand at 43.049 kb on - strand, within Atu6032 at 43.086 kb on + strand, within Atu6032 at 43.086 kb on + strand, within Atu6032 at 43.094 kb on - strand, within Atu6032 at 43.099 kb on - strand, within Atu6032 at 43.100 kb on + strand, within Atu6032 at 43.134 kb on + strand, within Atu6032 at 43.152 kb on - strand, within Atu6032 at 43.170 kb on + strand, within Atu6032 at 43.272 kb on - strand, within Atu6032 at 43.277 kb on + strand, within Atu6032 at 43.310 kb on + strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.311 kb on - strand, within Atu6032 at 43.324 kb on - strand, within Atu6032 at 43.383 kb on - strand at 43.429 kb on + strand at 43.437 kb on - strand at 43.448 kb on + strand at 43.509 kb on - strand, within Atu6033 at 43.589 kb on + strand, within Atu6033 at 43.629 kb on - strand, within Atu6033 at 43.725 kb on - strand, within Atu6033 at 43.781 kb on + strand, within Atu6033 at 43.808 kb on + strand, within Atu6033 at 43.818 kb on + strand, within Atu6033 at 43.826 kb on - strand, within Atu6033 at 43.826 kb on - strand, within Atu6033 at 43.883 kb on + strand, within Atu6033
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 40,598 + Atu6029 0.28 +0.7 40,598 + Atu6029 0.28 -1.0 40,598 + Atu6029 0.28 -0.3 40,600 + Atu6029 0.28 -0.1 40,622 - Atu6029 0.31 -0.5 40,682 + Atu6029 0.38 +0.4 40,728 - Atu6029 0.43 -0.2 40,760 + Atu6029 0.47 -1.6 40,760 + Atu6029 0.47 -0.1 40,765 + Atu6029 0.47 +0.0 40,773 - Atu6029 0.48 +1.7 40,773 - Atu6029 0.48 +0.5 40,783 + Atu6029 0.50 -0.9 40,827 - Atu6029 0.55 -0.1 40,903 + Atu6029 0.64 +0.1 40,911 - Atu6029 0.65 -0.0 40,929 + Atu6029 0.67 +0.3 40,929 + Atu6029 0.67 -1.2 40,929 + Atu6029 0.67 +0.3 40,932 + Atu6029 0.67 +0.2 40,938 - Atu6029 0.68 +0.3 40,947 - Atu6029 0.69 -0.4 40,965 + Atu6029 0.71 -1.5 40,985 + Atu6029 0.73 +0.9 40,998 + Atu6029 0.75 -0.8 41,006 - Atu6029 0.76 -1.1 41,008 + Atu6029 0.76 -3.0 41,054 - Atu6029 0.82 +1.6 41,054 - Atu6029 0.82 +0.1 41,054 - Atu6029 0.82 +1.1 41,054 - Atu6029 0.82 +0.4 41,054 - Atu6029 0.82 -1.3 41,070 + Atu6029 0.83 +0.5 41,080 + Atu6029 0.85 +0.8 41,080 + Atu6029 0.85 +0.0 41,080 + Atu6029 0.85 -0.5 41,088 - Atu6029 0.86 -0.2 41,088 - Atu6029 0.86 +0.8 41,179 - -1.3 41,195 + +0.7 41,195 - -0.2 41,259 - Atu6030 0.12 -0.2 41,259 - Atu6030 0.12 -2.6 41,275 + Atu6030 0.17 -0.1 41,292 - Atu6030 0.22 -0.9 41,325 - Atu6030 0.31 -0.8 41,351 - Atu6030 0.38 -1.8 41,387 - Atu6030 0.48 +0.2 41,487 + Atu6030 0.76 -2.1 41,502 + Atu6030 0.80 +0.1 41,502 + Atu6030 0.80 +0.5 41,521 + Atu6030 0.85 -1.0 41,529 - Atu6030 0.88 -0.1 41,533 - Atu6030 0.89 -0.7 41,534 - Atu6030 0.89 -0.7 41,540 + +0.5 41,636 + +0.2 41,649 + -0.1 41,741 - Atu6031 0.13 +0.6 41,766 + Atu6031 0.15 -0.2 41,770 + Atu6031 0.15 -0.6 41,814 - Atu6031 0.19 +0.1 41,862 + Atu6031 0.22 +0.1 41,862 + Atu6031 0.22 -2.0 41,870 - Atu6031 0.23 +1.5 41,870 - Atu6031 0.23 -0.2 41,905 - Atu6031 0.25 -1.1 41,924 + Atu6031 0.27 -0.8 41,962 - Atu6031 0.30 +0.5 41,972 - Atu6031 0.31 +0.2 42,003 - Atu6031 0.33 -1.0 42,003 - Atu6031 0.33 +1.0 42,046 + Atu6031 0.36 -0.7 42,046 - Atu6031 0.36 -0.0 42,064 - Atu6031 0.38 +0.3 42,071 - Atu6031 0.38 -0.2 42,101 + Atu6031 0.40 +0.5 42,115 + Atu6031 0.41 -0.1 42,151 + Atu6031 0.44 -1.0 42,159 - Atu6031 0.45 -2.1 42,187 + Atu6031 0.47 +0.9 42,195 - Atu6031 0.47 -0.0 42,264 - Atu6031 0.53 +0.7 42,276 + Atu6031 0.54 +0.2 42,276 + Atu6031 0.54 -0.5 42,283 + Atu6031 0.54 -2.2 42,298 + Atu6031 0.55 -0.1 42,300 - Atu6031 0.55 +1.2 42,309 + Atu6031 0.56 -1.6 42,398 + Atu6031 0.63 -2.1 42,398 + Atu6031 0.63 -1.0 42,406 - Atu6031 0.63 -0.1 42,458 + Atu6031 0.67 -0.3 42,500 - Atu6031 0.71 -0.1 42,591 + Atu6031 0.78 -0.8 42,625 + Atu6031 0.80 -0.0 42,649 + Atu6031 0.82 +0.0 42,655 - Atu6031 0.82 +0.1 42,655 - Atu6031 0.82 -0.6 42,660 + Atu6031 0.83 -0.6 42,660 + Atu6031 0.83 +0.1 42,668 - Atu6031 0.83 +0.7 42,680 + Atu6031 0.84 -1.7 42,745 + Atu6031 0.89 -1.4 42,856 - -0.1 42,856 - +0.4 42,894 - +0.7 42,894 - +0.3 42,916 - -0.3 43,049 - Atu6032 0.31 -1.2 43,086 + Atu6032 0.39 +1.2 43,086 + Atu6032 0.39 -1.7 43,094 - Atu6032 0.41 -1.4 43,099 - Atu6032 0.42 -1.0 43,100 + Atu6032 0.42 -0.7 43,134 + Atu6032 0.49 +0.2 43,152 - Atu6032 0.53 -0.2 43,170 + Atu6032 0.57 -0.3 43,272 - Atu6032 0.78 +1.3 43,277 + Atu6032 0.79 -0.7 43,310 + Atu6032 0.86 -0.2 43,311 - Atu6032 0.86 -0.5 43,311 - Atu6032 0.86 -0.9 43,311 - Atu6032 0.86 +0.7 43,324 - Atu6032 0.89 +0.2 43,383 - +1.2 43,429 + +0.1 43,437 - +0.3 43,448 + -1.3 43,509 - Atu6033 0.16 +1.2 43,589 + Atu6033 0.25 +1.5 43,629 - Atu6033 0.30 +0.0 43,725 - Atu6033 0.41 -0.0 43,781 + Atu6033 0.47 +0.0 43,808 + Atu6033 0.51 +1.1 43,818 + Atu6033 0.52 +0.6 43,826 - Atu6033 0.53 +0.0 43,826 - Atu6033 0.53 +1.3 43,883 + Atu6033 0.59 +0.6
Or see this region's nucleotide sequence