Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03010 and PS417_03015 are separated by 178 nucleotides PS417_03015 and PS417_03020 are separated by 99 nucleotides PS417_03020 and PS417_03025 are separated by 251 nucleotides
PS417_03010: PS417_03010 - XRE family transcriptional regulator, at 688,835 to 690,178
_03010
PS417_03015: PS417_03015 - hypothetical protein, at 690,357 to 695,255
_03015
PS417_03020: PS417_03020 - MFS transporter, at 695,355 to 695,648
_03020
PS417_03025: PS417_03025 - penicillin-binding protein 1C, at 695,900 to 698,191
_03025
Position (kb) 690
691
692
693
694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.724 kb on + strand, within PS417_03010 at 689.725 kb on - strand, within PS417_03010 at 689.855 kb on + strand, within PS417_03010 at 689.995 kb on + strand, within PS417_03010 at 689.996 kb on - strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.998 kb on - strand, within PS417_03010 at 690.167 kb on + strand at 690.167 kb on + strand at 690.168 kb on - strand at 690.316 kb on + strand at 690.316 kb on + strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.318 kb on + strand at 690.318 kb on + strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.321 kb on - strand at 690.321 kb on - strand at 690.362 kb on + strand at 690.362 kb on + strand at 690.363 kb on - strand at 690.553 kb on + strand at 690.553 kb on + strand at 690.554 kb on - strand at 690.996 kb on + strand, within PS417_03015 at 690.996 kb on + strand, within PS417_03015 at 691.161 kb on + strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015 at 691.190 kb on + strand, within PS417_03015 at 691.415 kb on + strand, within PS417_03015 at 691.415 kb on + strand, within PS417_03015 at 691.416 kb on - strand, within PS417_03015 at 691.669 kb on - strand, within PS417_03015 at 691.756 kb on - strand, within PS417_03015 at 691.811 kb on + strand, within PS417_03015 at 692.240 kb on - strand, within PS417_03015 at 692.320 kb on - strand, within PS417_03015 at 692.352 kb on + strand, within PS417_03015 at 692.352 kb on + strand, within PS417_03015 at 692.353 kb on - strand, within PS417_03015 at 692.647 kb on - strand, within PS417_03015 at 692.760 kb on + strand, within PS417_03015 at 693.060 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.840 kb on + strand, within PS417_03015 at 693.841 kb on - strand, within PS417_03015 at 693.871 kb on + strand, within PS417_03015 at 693.872 kb on - strand, within PS417_03015 at 693.872 kb on - strand at 693.872 kb on - strand, within PS417_03015 at 693.872 kb on - strand, within PS417_03015 at 693.993 kb on + strand, within PS417_03015 at 694.053 kb on + strand, within PS417_03015 at 694.053 kb on + strand, within PS417_03015 at 694.054 kb on - strand, within PS417_03015 at 694.054 kb on - strand, within PS417_03015 at 694.143 kb on + strand, within PS417_03015 at 694.143 kb on + strand, within PS417_03015 at 694.148 kb on - strand, within PS417_03015 at 694.148 kb on - strand, within PS417_03015 at 694.177 kb on - strand, within PS417_03015 at 695.083 kb on - strand at 695.083 kb on - strand at 695.083 kb on - strand at 695.257 kb on - strand at 695.279 kb on - strand at 695.335 kb on - strand at 695.335 kb on - strand at 695.335 kb on - strand at 695.346 kb on - strand at 695.346 kb on - strand at 695.588 kb on + strand, within PS417_03020 at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.708 kb on + strand at 695.708 kb on + strand at 695.708 kb on + strand at 695.752 kb on + strand at 695.817 kb on + strand at 695.877 kb on + strand at 695.878 kb on - strand at 696.072 kb on - strand at 696.072 kb on - strand at 696.075 kb on - strand at 696.095 kb on + strand at 696.095 kb on + strand at 696.096 kb on - strand at 696.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 689,724 + PS417_03010 0.66 +0.4 689,725 - PS417_03010 0.66 -0.2 689,855 + PS417_03010 0.76 -0.3 689,995 + PS417_03010 0.86 -0.9 689,996 - PS417_03010 0.86 +0.5 689,997 + PS417_03010 0.86 +0.1 689,997 + PS417_03010 0.86 +0.3 689,997 + PS417_03010 0.86 -0.1 689,998 - PS417_03010 0.87 +0.1 690,167 + -0.4 690,167 + -2.9 690,168 - +1.3 690,316 + -0.6 690,316 + +0.7 690,317 - -1.5 690,317 - +2.4 690,317 - +0.4 690,317 - +1.2 690,317 - -0.8 690,317 - +0.0 690,318 + +1.5 690,318 + -0.1 690,319 - -0.2 690,319 - +1.6 690,319 - -0.3 690,319 - +0.9 690,320 + +0.8 690,320 + +0.5 690,320 + -0.3 690,320 + +0.4 690,320 + +1.0 690,320 + +0.8 690,321 - -0.9 690,321 - -0.1 690,362 + -0.3 690,362 + +0.1 690,363 - +1.4 690,553 + +0.1 690,553 + -0.5 690,554 - -0.4 690,996 + PS417_03015 0.13 -1.2 690,996 + PS417_03015 0.13 -0.4 691,161 + PS417_03015 0.16 -0.2 691,162 - PS417_03015 0.16 -0.3 691,162 - PS417_03015 0.16 +0.4 691,190 + PS417_03015 0.17 +0.3 691,415 + PS417_03015 0.22 -0.3 691,415 + PS417_03015 0.22 -0.3 691,416 - PS417_03015 0.22 -0.7 691,669 - PS417_03015 0.27 -0.1 691,756 - PS417_03015 0.29 -1.4 691,811 + PS417_03015 0.30 -1.2 692,240 - PS417_03015 0.38 +0.5 692,320 - PS417_03015 0.40 -0.5 692,352 + PS417_03015 0.41 -1.2 692,352 + PS417_03015 0.41 -1.9 692,353 - PS417_03015 0.41 +0.3 692,647 - PS417_03015 0.47 -0.2 692,760 + PS417_03015 0.49 -0.6 693,060 + PS417_03015 0.55 -2.4 693,454 + PS417_03015 0.63 -0.7 693,454 + PS417_03015 0.63 +0.6 693,454 + PS417_03015 0.63 -0.9 693,454 + +2.5 693,454 + PS417_03015 0.63 +0.4 693,454 + PS417_03015 0.63 -1.6 693,454 + PS417_03015 0.63 +0.2 693,840 + PS417_03015 0.71 -0.8 693,841 - PS417_03015 0.71 -0.1 693,871 + PS417_03015 0.72 -0.6 693,872 - PS417_03015 0.72 -0.8 693,872 - +2.7 693,872 - PS417_03015 0.72 -1.0 693,872 - PS417_03015 0.72 -0.8 693,993 + PS417_03015 0.74 +0.1 694,053 + PS417_03015 0.75 -0.3 694,053 + PS417_03015 0.75 -1.9 694,054 - PS417_03015 0.75 +0.1 694,054 - PS417_03015 0.75 -0.6 694,143 + PS417_03015 0.77 -0.7 694,143 + PS417_03015 0.77 -1.6 694,148 - PS417_03015 0.77 -2.0 694,148 - PS417_03015 0.77 -1.0 694,177 - PS417_03015 0.78 -0.8 695,083 - -0.8 695,083 - -0.5 695,083 - +1.2 695,257 - +1.2 695,279 - +0.4 695,335 - -0.7 695,335 - -1.5 695,335 - -0.9 695,346 - +0.2 695,346 - +2.6 695,588 + PS417_03020 0.79 -2.2 695,648 + +0.4 695,648 + +0.1 695,648 + +0.1 695,648 + -0.3 695,648 + +0.5 695,648 + -0.9 695,648 + +0.8 695,648 + -1.2 695,648 + +0.8 695,648 + -1.2 695,649 - +0.3 695,649 - +0.1 695,649 - +0.2 695,649 - -0.4 695,649 - +0.7 695,649 - -0.4 695,649 - -0.1 695,649 - -0.2 695,708 + +0.4 695,708 + +1.2 695,708 + +0.1 695,752 + -1.8 695,817 + +0.8 695,877 + -1.3 695,878 - -0.0 696,072 - +0.7 696,072 - +0.3 696,075 - +0.3 696,095 + +0.5 696,095 + -1.3 696,096 - -1.5 696,113 + -1.5
Or see this region's nucleotide sequence