Strain Fitness in Pseudomonas simiae WCS417 around PS417_26435

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26430 and PS417_26435 are separated by 17 nucleotidesPS417_26435 and PS417_26440 are separated by 140 nucleotides PS417_26430: PS417_26430 - phosphoglycerate kinase, at 5,714,958 to 5,716,121 _26430 PS417_26435: PS417_26435 - glyceraldehyde-3-phosphate dehydrogenase, at 5,716,139 to 5,717,194 _26435 PS417_26440: PS417_26440 - transketolase, at 5,717,335 to 5,719,332 _26440 Position (kb) 5716 5717 5718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5715.351 kb on + strand, within PS417_26430at 5716.141 kb on - strandat 5716.141 kb on - strandat 5716.141 kb on - strandat 5716.156 kb on + strandat 5717.208 kb on - strandat 5717.208 kb on - strandat 5717.232 kb on - strandat 5717.329 kb on + strandat 5717.337 kb on - strandat 5717.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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5,715,351 + PS417_26430 0.34 -1.6
5,716,141 - -0.3
5,716,141 - -0.3
5,716,141 - +1.7
5,716,156 + -1.6
5,717,208 - +1.8
5,717,208 - +0.2
5,717,232 - -0.2
5,717,329 + -3.1
5,717,337 - -0.7
5,717,337 - +0.2

Or see this region's nucleotide sequence