Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24005 and PS417_24010 are separated by 16 nucleotides PS417_24010 and PS417_24015 are separated by 8 nucleotides PS417_24015 and PS417_24020 are separated by 200 nucleotides PS417_24020 and PS417_24025 are separated by 106 nucleotides
PS417_24005: PS417_24005 - phosphoglucosamine mutase, at 5,196,631 to 5,197,968
_24005
PS417_24010: PS417_24010 - dihydropteroate synthase, at 5,197,985 to 5,198,836
_24010
PS417_24015: PS417_24015 - ATP-dependent metalloprotease, at 5,198,845 to 5,200,755
_24015
PS417_24020: PS417_24020 - 23S rRNA methyltransferase, at 5,200,956 to 5,201,606
_24020
PS417_24025: PS417_24025 - RNA-binding protein, at 5,201,713 to 5,202,021
_24025
Position (kb) 5198
5199
5200
5201 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5197.969 kb on - strand at 5197.969 kb on - strand at 5197.969 kb on - strand at 5197.969 kb on - strand at 5198.847 kb on - strand at 5198.847 kb on - strand at 5200.832 kb on - strand at 5200.835 kb on - strand at 5200.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,197,969 - +0.1 5,197,969 - -2.6 5,197,969 - +0.2 5,197,969 - -5.9 5,198,847 - +0.3 5,198,847 - -1.2 5,200,832 - -1.3 5,200,835 - +0.1 5,200,844 - -1.2
Or see this region's nucleotide sequence