Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00120 and PS417_00125 overlap by 1 nucleotides PS417_00125 and PS417_00130 are separated by 36 nucleotides PS417_00130 and PS417_00135 are separated by 133 nucleotides
PS417_00120: PS417_00120 - coproporphyrinogen III oxidase, at 25,508 to 26,440
_00120
PS417_00125: PS417_00125 - shikimate dehydrogenase, at 26,440 to 27,258
_00125
PS417_00130: PS417_00130 - SulP family inorganic anion transporter, at 27,295 to 28,887
_00130
PS417_00135: PS417_00135 - glycine/betaine ABC transporter substrate-binding protein, at 29,021 to 29,935
_00135
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 26.536 kb on + strand, within PS417_00125 at 27.190 kb on + strand at 27.263 kb on - strand at 27.263 kb on - strand at 27.468 kb on - strand, within PS417_00130 at 27.468 kb on - strand, within PS417_00130 at 27.542 kb on + strand, within PS417_00130 at 27.542 kb on + strand, within PS417_00130 at 28.283 kb on + strand, within PS417_00130 at 28.283 kb on + strand, within PS417_00130 at 28.283 kb on + strand, within PS417_00130 at 28.284 kb on - strand, within PS417_00130 at 28.580 kb on + strand, within PS417_00130 at 28.580 kb on + strand, within PS417_00130 at 28.581 kb on - strand, within PS417_00130 at 28.581 kb on - strand, within PS417_00130 at 28.761 kb on + strand at 28.898 kb on + strand at 28.899 kb on - strand at 28.902 kb on + strand at 28.902 kb on + strand at 28.902 kb on + strand at 28.902 kb on + strand at 28.903 kb on - strand at 28.903 kb on - strand at 28.907 kb on + strand at 28.907 kb on + strand at 29.001 kb on + strand at 29.001 kb on + strand at 29.002 kb on - strand at 29.002 kb on - strand at 29.002 kb on - strand at 29.015 kb on + strand at 29.015 kb on + strand at 29.036 kb on + strand at 29.090 kb on - strand at 29.263 kb on + strand at 29.264 kb on - strand, within PS417_00135 at 29.265 kb on + strand, within PS417_00135 at 29.266 kb on - strand, within PS417_00135 at 29.486 kb on - strand, within PS417_00135 at 29.514 kb on + strand, within PS417_00135 at 29.542 kb on - strand, within PS417_00135 at 29.583 kb on - strand, within PS417_00135 at 29.583 kb on - strand, within PS417_00135 at 29.583 kb on - strand, within PS417_00135 at 29.586 kb on + strand, within PS417_00135 at 29.671 kb on - strand, within PS417_00135 at 29.671 kb on - strand, within PS417_00135 at 29.779 kb on - strand, within PS417_00135 at 29.855 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 26,536 + PS417_00125 0.12 +0.4 27,190 + -1.0 27,263 - -0.6 27,263 - -0.1 27,468 - PS417_00130 0.11 +1.3 27,468 - PS417_00130 0.11 +0.6 27,542 + PS417_00130 0.16 +0.6 27,542 + PS417_00130 0.16 +0.4 28,283 + PS417_00130 0.62 +0.1 28,283 + PS417_00130 0.62 +0.5 28,283 + PS417_00130 0.62 +0.0 28,284 - PS417_00130 0.62 -1.1 28,580 + PS417_00130 0.81 -0.4 28,580 + PS417_00130 0.81 +1.3 28,581 - PS417_00130 0.81 +0.4 28,581 - PS417_00130 0.81 +0.2 28,761 + -0.2 28,898 + -0.1 28,899 - -1.6 28,902 + +0.8 28,902 + -0.5 28,902 + +0.3 28,902 + +0.8 28,903 - -2.4 28,903 - -0.1 28,907 + +0.3 28,907 + +0.8 29,001 + +1.3 29,001 + +0.0 29,002 - +1.4 29,002 - -1.7 29,002 - -2.1 29,015 + -0.1 29,015 + +0.6 29,036 + -0.9 29,090 - +1.4 29,263 + +2.8 29,264 - PS417_00135 0.27 -0.4 29,265 + PS417_00135 0.27 +0.0 29,266 - PS417_00135 0.27 +0.4 29,486 - PS417_00135 0.51 -1.6 29,514 + PS417_00135 0.54 -1.8 29,542 - PS417_00135 0.57 -1.7 29,583 - PS417_00135 0.61 +1.9 29,583 - PS417_00135 0.61 -1.7 29,583 - PS417_00135 0.61 -0.1 29,586 + PS417_00135 0.62 -1.0 29,671 - PS417_00135 0.71 -0.4 29,671 - PS417_00135 0.71 +0.5 29,779 - PS417_00135 0.83 -1.0 29,855 + -2.0
Or see this region's nucleotide sequence