Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01215 and PS417_01220 are separated by 28 nucleotides PS417_01220 and PS417_01230 are separated by 610 nucleotides PS417_01230 and PS417_01235 overlap by 28 nucleotides PS417_01235 and PS417_01245 are separated by 345 nucleotides
PS417_01215: PS417_01215 - membrane protein, at 267,031 to 267,882
_01215
PS417_01220: PS417_01220 - hypothetical protein, at 267,911 to 268,267
_01220
PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123
_01230
PS417_01235: PS417_01235 - cell division protein Fic, at 269,096 to 269,695
_01235
PS417_01245: PS417_01245 - hypothetical protein, at 270,041 to 271,216
_01245
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.966 kb on + strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 268.054 kb on - strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.358 kb on + strand at 268.358 kb on + strand at 268.359 kb on - strand at 268.359 kb on - strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.406 kb on + strand at 268.406 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.423 kb on + strand at 268.500 kb on + strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.504 kb on + strand at 268.504 kb on + strand at 268.598 kb on + strand at 268.598 kb on + strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.648 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.653 kb on - strand at 268.820 kb on + strand at 268.820 kb on + strand at 269.011 kb on - strand, within PS417_01230 at 269.011 kb on - strand, within PS417_01230 at 269.014 kb on + strand, within PS417_01230 at 269.015 kb on - strand, within PS417_01230 at 269.015 kb on - strand, within PS417_01230 at 269.078 kb on + strand, within PS417_01230 at 269.119 kb on + strand at 269.120 kb on - strand at 269.173 kb on + strand, within PS417_01235 at 269.173 kb on + strand, within PS417_01235 at 269.361 kb on + strand, within PS417_01235 at 269.361 kb on + strand, within PS417_01235 at 269.362 kb on - strand, within PS417_01235 at 269.485 kb on - strand, within PS417_01235 at 269.512 kb on + strand, within PS417_01235 at 269.513 kb on - strand, within PS417_01235 at 269.513 kb on - strand, within PS417_01235 at 269.513 kb on - strand, within PS417_01235 at 269.535 kb on + strand, within PS417_01235 at 269.536 kb on - strand, within PS417_01235 at 269.828 kb on + strand at 269.873 kb on + strand at 269.899 kb on + strand at 269.949 kb on + strand at 269.982 kb on + strand at 269.983 kb on - strand at 269.983 kb on - strand at 269.983 kb on - strand at 270.004 kb on + strand at 270.005 kb on - strand at 270.022 kb on + strand at 270.023 kb on - strand at 270.023 kb on - strand at 270.026 kb on + strand at 270.026 kb on + strand at 270.027 kb on - strand at 270.027 kb on - strand at 270.036 kb on + strand at 270.037 kb on - strand at 270.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 267,897 - +0.8 267,897 - -2.1 267,897 - +1.0 267,897 - +1.3 267,966 + PS417_01220 0.15 +0.1 267,967 - PS417_01220 0.16 +0.2 267,967 - PS417_01220 0.16 -1.0 268,054 - PS417_01220 0.40 +0.8 268,059 + PS417_01220 0.41 -0.1 268,059 + PS417_01220 0.41 -0.7 268,059 + PS417_01220 0.41 +1.0 268,060 - PS417_01220 0.42 +1.2 268,060 - PS417_01220 0.42 +2.9 268,060 - PS417_01220 0.42 +0.3 268,358 + +0.4 268,358 + -0.3 268,359 - -0.2 268,359 - +0.5 268,397 + -0.5 268,397 + +0.5 268,397 + +0.5 268,397 + -0.0 268,397 + -0.0 268,401 + +0.2 268,401 + +1.2 268,401 + -0.6 268,401 + +1.6 268,402 - -0.7 268,402 - +0.7 268,402 - -0.2 268,406 + +0.0 268,406 + -0.6 268,409 + -0.1 268,409 + +0.0 268,409 + +0.5 268,423 + -1.1 268,500 + +0.0 268,501 - -0.7 268,501 - -0.5 268,501 - -0.2 268,504 + -0.0 268,504 + -0.8 268,598 + -0.6 268,598 + -0.6 268,599 - +1.5 268,599 - +0.1 268,599 - +0.3 268,648 + +0.3 268,652 + -0.7 268,652 + +1.5 268,652 + -1.8 268,652 + -2.0 268,652 + -0.3 268,653 - -0.5 268,820 + +0.1 268,820 + +0.0 269,011 - PS417_01230 0.54 +0.1 269,011 - PS417_01230 0.54 -0.5 269,014 + PS417_01230 0.55 +1.3 269,015 - PS417_01230 0.56 +0.5 269,015 - PS417_01230 0.56 +2.0 269,078 + PS417_01230 0.81 +0.3 269,119 + -1.4 269,120 - -0.6 269,173 + PS417_01235 0.13 -0.1 269,173 + PS417_01235 0.13 +0.7 269,361 + PS417_01235 0.44 +0.1 269,361 + PS417_01235 0.44 +0.8 269,362 - PS417_01235 0.44 +0.9 269,485 - PS417_01235 0.65 +0.4 269,512 + PS417_01235 0.69 +0.3 269,513 - PS417_01235 0.69 -0.1 269,513 - PS417_01235 0.69 -0.7 269,513 - PS417_01235 0.69 -0.7 269,535 + PS417_01235 0.73 +0.1 269,536 - PS417_01235 0.73 +0.1 269,828 + -0.4 269,873 + +1.4 269,899 + -0.2 269,949 + -2.4 269,982 + -1.4 269,983 - -0.1 269,983 - +0.2 269,983 - +1.5 270,004 + -0.1 270,005 - +0.3 270,022 + -1.0 270,023 - +0.7 270,023 - +0.4 270,026 + -0.6 270,026 + -1.1 270,027 - +0.1 270,027 - -0.5 270,036 + +0.1 270,037 - -0.5 270,037 - +1.4
Or see this region's nucleotide sequence