Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00070 and PS417_00075 are separated by 136 nucleotides PS417_00075 and PS417_00080 are separated by 17 nucleotides PS417_00080 and PS417_00085 are separated by 21 nucleotides
PS417_00070: PS417_00070 - lipid A biosynthesis lauroyl acyltransferase, at 15,974 to 16,861
_00070
PS417_00075: PS417_00075 - hypothetical protein, at 16,998 to 17,309
_00075
PS417_00080: PS417_00080 - potassium transporter peripheral membrane component, at 17,327 to 18,700
_00080
PS417_00085: PS417_00085 - 16S rRNA methyltransferase, at 18,722 to 20,032
_00085
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 16.856 kb on + strand at 16.924 kb on + strand at 16.924 kb on + strand at 16.925 kb on - strand at 17.079 kb on + strand, within PS417_00075 at 17.080 kb on - strand, within PS417_00075 at 17.165 kb on - strand, within PS417_00075 at 17.165 kb on - strand, within PS417_00075 at 17.268 kb on - strand, within PS417_00075 at 17.701 kb on - strand, within PS417_00080 at 17.701 kb on - strand, within PS417_00080 at 17.767 kb on + strand, within PS417_00080 at 17.767 kb on + strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 18.007 kb on + strand, within PS417_00080 at 18.009 kb on + strand, within PS417_00080 at 18.009 kb on + strand, within PS417_00080 at 18.010 kb on - strand, within PS417_00080 at 18.010 kb on - strand, within PS417_00080 at 18.222 kb on + strand, within PS417_00080 at 18.309 kb on + strand, within PS417_00080 at 18.309 kb on + strand, within PS417_00080 at 18.440 kb on - strand, within PS417_00080 at 18.440 kb on - strand, within PS417_00080 at 18.440 kb on - strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.558 kb on - strand, within PS417_00080 at 18.558 kb on - strand, within PS417_00080 at 18.763 kb on - strand at 18.924 kb on + strand, within PS417_00085
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 16,856 + +0.6 16,924 + -0.2 16,924 + +0.1 16,925 - +0.5 17,079 + PS417_00075 0.26 +1.2 17,080 - PS417_00075 0.26 +1.0 17,165 - PS417_00075 0.54 +3.8 17,165 - PS417_00075 0.54 -1.8 17,268 - PS417_00075 0.87 -0.3 17,701 - PS417_00080 0.27 +0.5 17,701 - PS417_00080 0.27 +0.0 17,767 + PS417_00080 0.32 -2.0 17,767 + PS417_00080 0.32 -0.3 17,768 - PS417_00080 0.32 +0.2 17,768 - PS417_00080 0.32 +0.0 17,768 - PS417_00080 0.32 +0.4 17,768 - PS417_00080 0.32 -0.5 17,768 - PS417_00080 0.32 -1.7 18,007 + PS417_00080 0.49 -0.6 18,009 + PS417_00080 0.50 -1.3 18,009 + PS417_00080 0.50 -0.9 18,010 - PS417_00080 0.50 -0.6 18,010 - PS417_00080 0.50 -1.3 18,222 + PS417_00080 0.65 +1.4 18,309 + PS417_00080 0.71 +1.1 18,309 + PS417_00080 0.71 -1.0 18,440 - PS417_00080 0.81 +0.0 18,440 - PS417_00080 0.81 +0.0 18,440 - PS417_00080 0.81 -1.6 18,557 + PS417_00080 0.90 -1.1 18,557 + PS417_00080 0.90 +0.3 18,557 + PS417_00080 0.90 -1.3 18,557 + PS417_00080 0.90 +1.0 18,558 - PS417_00080 0.90 -0.7 18,558 - PS417_00080 0.90 +0.4 18,763 - -0.2 18,924 + PS417_00085 0.15 -1.2
Or see this region's nucleotide sequence