Experiment: Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3502 and Atu3503 are separated by 3 nucleotides Atu3503 and Atu3504 are separated by 61 nucleotides Atu3504 and Atu3505 are separated by 169 nucleotides
Atu3502: Atu3502 - ABC transporter permease, at 552,840 to 553,727
Atu3502
Atu3503: Atu3503 - ABC transporter permease, at 553,731 to 554,564
Atu3503
Atu3504: Atu3504 - sulfate ABC transporter substrate-binding protein, at 554,626 to 555,612
Atu3504
Atu3505: Atu3505 - 3-hydroxyisobutyryl-CoA hydrolase, at 555,782 to 556,834
Atu3505
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 553.707 kb on - strand at 553.742 kb on + strand at 553.744 kb on + strand at 553.752 kb on - strand at 553.752 kb on - strand at 553.866 kb on - strand, within Atu3503 at 553.976 kb on + strand, within Atu3503 at 554.140 kb on - strand, within Atu3503 at 554.154 kb on - strand, within Atu3503 at 554.157 kb on - strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.159 kb on + strand, within Atu3503 at 554.320 kb on - strand, within Atu3503 at 554.341 kb on + strand, within Atu3503 at 554.443 kb on - strand, within Atu3503 at 554.457 kb on - strand, within Atu3503 at 554.504 kb on + strand at 554.504 kb on + strand at 554.512 kb on - strand at 554.512 kb on - strand at 554.532 kb on + strand at 554.740 kb on - strand, within Atu3504 at 554.819 kb on + strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.913 kb on + strand, within Atu3504 at 554.931 kb on - strand, within Atu3504 at 554.933 kb on - strand, within Atu3504 at 554.990 kb on + strand, within Atu3504 at 555.028 kb on + strand, within Atu3504 at 555.034 kb on - strand, within Atu3504 at 555.060 kb on - strand, within Atu3504 at 555.131 kb on + strand, within Atu3504 at 555.163 kb on - strand, within Atu3504 at 555.176 kb on - strand, within Atu3504 at 555.239 kb on + strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.278 kb on + strand, within Atu3504 at 555.332 kb on + strand, within Atu3504 at 555.369 kb on + strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.442 kb on - strand, within Atu3504 at 555.466 kb on - strand, within Atu3504 at 555.492 kb on - strand, within Atu3504 at 555.547 kb on - strand at 555.571 kb on - strand at 555.638 kb on + strand at 555.788 kb on - strand at 555.788 kb on - strand at 555.795 kb on - strand at 555.840 kb on - strand at 555.899 kb on + strand, within Atu3505 at 555.904 kb on + strand, within Atu3505 at 556.070 kb on + strand, within Atu3505 at 556.217 kb on + strand, within Atu3505 at 556.239 kb on + strand, within Atu3505 at 556.253 kb on + strand, within Atu3505 at 556.259 kb on - strand, within Atu3505 at 556.522 kb on + strand, within Atu3505 at 556.526 kb on + strand, within Atu3505
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 553,707 - -2.7 553,742 + +0.6 553,744 + +1.1 553,752 - +0.9 553,752 - -0.7 553,866 - Atu3503 0.16 -2.3 553,976 + Atu3503 0.29 +1.5 554,140 - Atu3503 0.49 -2.7 554,154 - Atu3503 0.51 +0.8 554,157 - Atu3503 0.51 +1.0 554,159 + Atu3503 0.51 -0.2 554,159 + Atu3503 0.51 +1.1 554,320 - Atu3503 0.71 +0.0 554,341 + Atu3503 0.73 +0.7 554,443 - Atu3503 0.85 -0.2 554,457 - Atu3503 0.87 +0.6 554,504 + -0.6 554,504 + +1.0 554,512 - -0.4 554,512 - +0.7 554,532 + +0.8 554,740 - Atu3504 0.12 -0.1 554,819 + Atu3504 0.20 -0.7 554,827 - Atu3504 0.20 +1.5 554,827 - Atu3504 0.20 +0.9 554,913 + Atu3504 0.29 +0.2 554,931 - Atu3504 0.31 -0.5 554,933 - Atu3504 0.31 +0.6 554,990 + Atu3504 0.37 +0.7 555,028 + Atu3504 0.41 +0.7 555,034 - Atu3504 0.41 +1.0 555,060 - Atu3504 0.44 -0.4 555,131 + Atu3504 0.51 -0.8 555,163 - Atu3504 0.54 +0.9 555,176 - Atu3504 0.56 -1.5 555,239 + Atu3504 0.62 -1.8 555,247 - Atu3504 0.63 +0.9 555,247 - Atu3504 0.63 +1.0 555,278 + Atu3504 0.66 -2.0 555,332 + Atu3504 0.72 -2.3 555,369 + Atu3504 0.75 -0.6 555,377 - Atu3504 0.76 -0.9 555,377 - Atu3504 0.76 +2.3 555,377 - Atu3504 0.76 -0.2 555,377 - Atu3504 0.76 +1.5 555,377 - Atu3504 0.76 +0.8 555,442 - Atu3504 0.83 +0.2 555,466 - Atu3504 0.85 +0.2 555,492 - Atu3504 0.88 -0.4 555,547 - -1.1 555,571 - +1.2 555,638 + +0.2 555,788 - +1.2 555,788 - -0.1 555,795 - -1.8 555,840 - +1.3 555,899 + Atu3505 0.11 +0.3 555,904 + Atu3505 0.12 -3.0 556,070 + Atu3505 0.27 -0.8 556,217 + Atu3505 0.41 +0.5 556,239 + Atu3505 0.43 -0.7 556,253 + Atu3505 0.45 -1.2 556,259 - Atu3505 0.45 -1.2 556,522 + Atu3505 0.70 -0.8 556,526 + Atu3505 0.71 +0.5
Or see this region's nucleotide sequence