Experiment: Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3329 and Atu3330 are separated by 144 nucleotides Atu3330 and Atu3331 are separated by 138 nucleotides Atu3331 and Atu3332 are separated by 19 nucleotides
Atu3329: Atu3329 - beta alanine--pyruvate transaminase, at 363,091 to 364,425
Atu3329
Atu3330: Atu3330 - methyl-accepting chemotaxis protein, at 364,570 to 366,387
Atu3330
Atu3331: Atu3331 - hypothetical protein, at 366,526 to 367,311
Atu3331
Atu3332: Atu3332 - hypothetical protein, at 367,331 to 368,317
Atu3332
Position (kb) 364
365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 363.684 kb on - strand, within Atu3329 at 363.686 kb on + strand, within Atu3329 at 363.711 kb on - strand, within Atu3329 at 363.801 kb on + strand, within Atu3329 at 363.847 kb on + strand, within Atu3329 at 363.943 kb on + strand, within Atu3329 at 363.954 kb on + strand, within Atu3329 at 363.982 kb on + strand, within Atu3329 at 363.990 kb on - strand, within Atu3329 at 364.000 kb on + strand, within Atu3329 at 364.156 kb on + strand, within Atu3329 at 364.274 kb on + strand, within Atu3329 at 364.381 kb on - strand at 364.405 kb on + strand at 364.413 kb on - strand at 364.695 kb on - strand at 364.756 kb on + strand, within Atu3330 at 364.936 kb on + strand, within Atu3330 at 365.372 kb on - strand, within Atu3330 at 365.372 kb on - strand, within Atu3330 at 365.481 kb on - strand, within Atu3330 at 365.554 kb on + strand, within Atu3330 at 365.562 kb on - strand, within Atu3330 at 365.567 kb on + strand, within Atu3330 at 365.664 kb on - strand, within Atu3330 at 365.693 kb on + strand, within Atu3330 at 365.737 kb on - strand, within Atu3330 at 365.767 kb on - strand, within Atu3330 at 365.967 kb on + strand, within Atu3330 at 366.058 kb on - strand, within Atu3330 at 366.063 kb on - strand, within Atu3330 at 366.112 kb on - strand, within Atu3330 at 366.162 kb on + strand, within Atu3330 at 366.189 kb on + strand, within Atu3330 at 366.199 kb on - strand, within Atu3330 at 366.225 kb on - strand at 366.240 kb on - strand at 366.497 kb on - strand at 366.542 kb on + strand at 366.627 kb on - strand, within Atu3331 at 366.705 kb on + strand, within Atu3331 at 366.768 kb on - strand, within Atu3331 at 366.983 kb on + strand, within Atu3331 at 366.992 kb on + strand, within Atu3331 at 367.000 kb on - strand, within Atu3331 at 367.086 kb on - strand, within Atu3331 at 367.247 kb on - strand at 367.276 kb on - strand at 367.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 363,684 - Atu3329 0.44 +0.2 363,686 + Atu3329 0.45 +0.2 363,711 - Atu3329 0.46 +0.6 363,801 + Atu3329 0.53 +0.9 363,847 + Atu3329 0.57 -0.4 363,943 + Atu3329 0.64 +0.8 363,954 + Atu3329 0.65 -1.1 363,982 + Atu3329 0.67 -1.2 363,990 - Atu3329 0.67 +0.0 364,000 + Atu3329 0.68 +0.2 364,156 + Atu3329 0.80 +0.5 364,274 + Atu3329 0.89 -0.4 364,381 - +0.8 364,405 + -0.4 364,413 - -0.6 364,695 - +0.9 364,756 + Atu3330 0.10 +0.7 364,936 + Atu3330 0.20 -0.5 365,372 - Atu3330 0.44 +0.6 365,372 - Atu3330 0.44 +0.1 365,481 - Atu3330 0.50 +0.2 365,554 + Atu3330 0.54 +0.2 365,562 - Atu3330 0.55 -0.2 365,567 + Atu3330 0.55 -1.5 365,664 - Atu3330 0.60 +3.2 365,693 + Atu3330 0.62 +1.5 365,737 - Atu3330 0.64 -0.2 365,767 - Atu3330 0.66 -0.6 365,967 + Atu3330 0.77 -0.3 366,058 - Atu3330 0.82 -0.1 366,063 - Atu3330 0.82 +0.2 366,112 - Atu3330 0.85 +0.4 366,162 + Atu3330 0.88 -0.8 366,189 + Atu3330 0.89 +0.4 366,199 - Atu3330 0.90 +0.7 366,225 - -0.6 366,240 - -0.4 366,497 - -2.3 366,542 + -0.2 366,627 - Atu3331 0.13 +1.8 366,705 + Atu3331 0.23 -0.2 366,768 - Atu3331 0.31 -0.3 366,983 + Atu3331 0.58 -0.0 366,992 + Atu3331 0.59 -0.1 367,000 - Atu3331 0.60 -0.1 367,086 - Atu3331 0.71 +0.1 367,247 - +0.0 367,276 - -1.2 367,296 + +1.0
Or see this region's nucleotide sequence