Experiment: Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0247 and Atu0248 are separated by 137 nucleotides Atu0248 and Atu0249 are separated by 3 nucleotides
Atu0247: Atu0247 - hypothetical protein, at 245,112 to 246,185
Atu0247
Atu0248: Atu0248 - transcriptional regulator, AraC family, at 246,323 to 247,420
Atu0248
Atu0249: Atu0249 - ABC transporter, substrate binding protein (sugar), at 247,424 to 248,527
Atu0249
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 245.425 kb on + strand, within Atu0247 at 245.426 kb on + strand, within Atu0247 at 245.434 kb on - strand, within Atu0247 at 245.459 kb on + strand, within Atu0247 at 245.487 kb on + strand, within Atu0247 at 245.493 kb on - strand, within Atu0247 at 245.500 kb on + strand, within Atu0247 at 245.539 kb on + strand, within Atu0247 at 245.565 kb on + strand, within Atu0247 at 245.573 kb on - strand, within Atu0247 at 245.573 kb on - strand, within Atu0247 at 245.728 kb on + strand, within Atu0247 at 245.739 kb on - strand, within Atu0247 at 245.740 kb on + strand, within Atu0247 at 245.862 kb on + strand, within Atu0247 at 245.865 kb on - strand, within Atu0247 at 245.895 kb on - strand, within Atu0247 at 245.899 kb on + strand, within Atu0247 at 245.906 kb on + strand, within Atu0247 at 245.983 kb on - strand, within Atu0247 at 245.985 kb on + strand, within Atu0247 at 246.033 kb on - strand, within Atu0247 at 246.040 kb on + strand, within Atu0247 at 246.111 kb on + strand at 246.169 kb on + strand at 246.169 kb on + strand at 246.191 kb on - strand at 246.334 kb on + strand at 246.354 kb on - strand at 246.438 kb on + strand, within Atu0248 at 246.445 kb on + strand, within Atu0248 at 246.482 kb on - strand, within Atu0248 at 246.512 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.584 kb on - strand, within Atu0248 at 246.589 kb on - strand, within Atu0248 at 246.597 kb on + strand, within Atu0248 at 246.619 kb on - strand, within Atu0248 at 246.665 kb on + strand, within Atu0248 at 246.793 kb on + strand, within Atu0248 at 246.877 kb on - strand, within Atu0248 at 246.916 kb on + strand, within Atu0248 at 246.927 kb on + strand, within Atu0248 at 247.029 kb on - strand, within Atu0248 at 247.068 kb on - strand, within Atu0248 at 247.120 kb on - strand, within Atu0248 at 247.247 kb on + strand, within Atu0248 at 247.346 kb on + strand at 247.388 kb on - strand at 247.493 kb on + strand at 247.615 kb on + strand, within Atu0249 at 247.630 kb on + strand, within Atu0249 at 247.662 kb on - strand, within Atu0249 at 247.671 kb on - strand, within Atu0249 at 247.721 kb on - strand, within Atu0249 at 247.742 kb on - strand, within Atu0249 at 247.797 kb on - strand, within Atu0249 at 247.808 kb on - strand, within Atu0249 at 247.907 kb on - strand, within Atu0249 at 247.989 kb on - strand, within Atu0249 at 248.012 kb on - strand, within Atu0249 at 248.137 kb on + strand, within Atu0249 at 248.194 kb on - strand, within Atu0249 at 248.201 kb on + strand, within Atu0249 at 248.242 kb on - strand, within Atu0249 at 248.363 kb on + strand, within Atu0249 at 248.371 kb on - strand, within Atu0249 at 248.405 kb on + strand, within Atu0249
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 245,425 + Atu0247 0.29 -0.5 245,426 + Atu0247 0.29 -3.5 245,434 - Atu0247 0.30 -0.7 245,459 + Atu0247 0.32 +0.6 245,487 + Atu0247 0.35 -0.1 245,493 - Atu0247 0.35 -2.0 245,500 + Atu0247 0.36 +0.1 245,539 + Atu0247 0.40 +0.3 245,565 + Atu0247 0.42 -1.7 245,573 - Atu0247 0.43 +0.6 245,573 - Atu0247 0.43 -1.9 245,728 + Atu0247 0.57 -0.4 245,739 - Atu0247 0.58 -0.9 245,740 + Atu0247 0.58 -0.7 245,862 + Atu0247 0.70 -1.4 245,865 - Atu0247 0.70 -0.4 245,895 - Atu0247 0.73 +1.8 245,899 + Atu0247 0.73 +0.6 245,906 + Atu0247 0.74 -0.8 245,983 - Atu0247 0.81 +0.9 245,985 + Atu0247 0.81 +0.3 246,033 - Atu0247 0.86 -0.1 246,040 + Atu0247 0.86 -0.5 246,111 + +0.8 246,169 + +0.5 246,169 + +0.8 246,191 - +1.8 246,334 + +1.0 246,354 - -0.2 246,438 + Atu0248 0.10 -0.1 246,445 + Atu0248 0.11 +1.3 246,482 - Atu0248 0.14 -1.0 246,512 + Atu0248 0.17 -1.9 246,576 + Atu0248 0.23 +0.2 246,576 + Atu0248 0.23 -0.3 246,584 - Atu0248 0.24 -0.3 246,589 - Atu0248 0.24 -0.7 246,597 + Atu0248 0.25 -0.1 246,619 - Atu0248 0.27 -0.5 246,665 + Atu0248 0.31 -0.5 246,793 + Atu0248 0.43 +0.3 246,877 - Atu0248 0.50 -0.0 246,916 + Atu0248 0.54 -3.1 246,927 + Atu0248 0.55 -0.1 247,029 - Atu0248 0.64 +0.0 247,068 - Atu0248 0.68 -0.5 247,120 - Atu0248 0.73 -0.3 247,247 + Atu0248 0.84 +0.6 247,346 + +0.2 247,388 - +0.4 247,493 + -0.7 247,615 + Atu0249 0.17 -2.3 247,630 + Atu0249 0.19 -1.9 247,662 - Atu0249 0.22 -0.8 247,671 - Atu0249 0.22 -0.5 247,721 - Atu0249 0.27 +0.4 247,742 - Atu0249 0.29 -0.0 247,797 - Atu0249 0.34 +0.1 247,808 - Atu0249 0.35 +3.5 247,907 - Atu0249 0.44 -0.7 247,989 - Atu0249 0.51 +0.8 248,012 - Atu0249 0.53 -0.4 248,137 + Atu0249 0.65 -0.0 248,194 - Atu0249 0.70 +0.9 248,201 + Atu0249 0.70 -1.6 248,242 - Atu0249 0.74 -0.4 248,363 + Atu0249 0.85 +0.7 248,371 - Atu0249 0.86 +0.3 248,405 + Atu0249 0.89 -0.9
Or see this region's nucleotide sequence