Experiment: Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0245 and Atu0246 are separated by 17 nucleotides Atu0246 and Atu0247 are separated by 14 nucleotides Atu0247 and Atu0248 are separated by 137 nucleotides
Atu0245: Atu0245 - transcriptional regulator, at 243,980 to 244,561
Atu0245
Atu0246: Atu0246 - acetyltransferase, at 244,579 to 245,097
Atu0246
Atu0247: Atu0247 - hypothetical protein, at 245,112 to 246,185
Atu0247
Atu0248: Atu0248 - transcriptional regulator, AraC family, at 246,323 to 247,420
Atu0248
Position (kb) 245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.156 kb on + strand, within Atu0245 at 244.166 kb on + strand, within Atu0245 at 244.169 kb on - strand, within Atu0245 at 244.174 kb on - strand, within Atu0245 at 244.239 kb on + strand, within Atu0245 at 244.246 kb on + strand, within Atu0245 at 244.258 kb on + strand, within Atu0245 at 244.439 kb on + strand, within Atu0245 at 244.442 kb on - strand, within Atu0245 at 244.445 kb on + strand, within Atu0245 at 244.553 kb on - strand at 244.573 kb on - strand at 244.714 kb on - strand, within Atu0246 at 244.759 kb on + strand, within Atu0246 at 244.784 kb on + strand, within Atu0246 at 244.791 kb on + strand, within Atu0246 at 244.799 kb on - strand, within Atu0246 at 244.799 kb on - strand, within Atu0246 at 244.891 kb on - strand, within Atu0246 at 244.905 kb on + strand, within Atu0246 at 244.931 kb on - strand, within Atu0246 at 244.931 kb on - strand, within Atu0246 at 244.946 kb on + strand, within Atu0246 at 244.959 kb on + strand, within Atu0246 at 244.994 kb on + strand, within Atu0246 at 245.031 kb on + strand, within Atu0246 at 245.109 kb on + strand at 245.109 kb on + strand at 245.109 kb on + strand at 245.117 kb on - strand at 245.268 kb on - strand, within Atu0247 at 245.311 kb on - strand, within Atu0247 at 245.425 kb on + strand, within Atu0247 at 245.426 kb on + strand, within Atu0247 at 245.434 kb on - strand, within Atu0247 at 245.459 kb on + strand, within Atu0247 at 245.487 kb on + strand, within Atu0247 at 245.493 kb on - strand, within Atu0247 at 245.500 kb on + strand, within Atu0247 at 245.539 kb on + strand, within Atu0247 at 245.565 kb on + strand, within Atu0247 at 245.573 kb on - strand, within Atu0247 at 245.573 kb on - strand, within Atu0247 at 245.728 kb on + strand, within Atu0247 at 245.739 kb on - strand, within Atu0247 at 245.740 kb on + strand, within Atu0247 at 245.862 kb on + strand, within Atu0247 at 245.865 kb on - strand, within Atu0247 at 245.895 kb on - strand, within Atu0247 at 245.899 kb on + strand, within Atu0247 at 245.906 kb on + strand, within Atu0247 at 245.983 kb on - strand, within Atu0247 at 245.985 kb on + strand, within Atu0247 at 246.033 kb on - strand, within Atu0247 at 246.040 kb on + strand, within Atu0247 at 246.111 kb on + strand at 246.169 kb on + strand at 246.169 kb on + strand at 246.191 kb on - strand at 246.334 kb on + strand at 246.354 kb on - strand at 246.438 kb on + strand, within Atu0248 at 246.445 kb on + strand, within Atu0248 at 246.482 kb on - strand, within Atu0248 at 246.512 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.576 kb on + strand, within Atu0248 at 246.584 kb on - strand, within Atu0248 at 246.589 kb on - strand, within Atu0248 at 246.597 kb on + strand, within Atu0248 at 246.619 kb on - strand, within Atu0248 at 246.665 kb on + strand, within Atu0248 at 246.793 kb on + strand, within Atu0248 at 246.877 kb on - strand, within Atu0248 at 246.916 kb on + strand, within Atu0248 at 246.927 kb on + strand, within Atu0248 at 247.029 kb on - strand, within Atu0248 at 247.068 kb on - strand, within Atu0248 at 247.120 kb on - strand, within Atu0248
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 244,156 + Atu0245 0.30 +0.9 244,166 + Atu0245 0.32 -0.4 244,169 - Atu0245 0.32 +0.5 244,174 - Atu0245 0.33 -2.9 244,239 + Atu0245 0.45 +0.6 244,246 + Atu0245 0.46 -2.4 244,258 + Atu0245 0.48 +0.7 244,439 + Atu0245 0.79 +0.7 244,442 - Atu0245 0.79 -2.2 244,445 + Atu0245 0.80 +0.8 244,553 - -1.2 244,573 - +0.4 244,714 - Atu0246 0.26 -0.1 244,759 + Atu0246 0.35 -1.1 244,784 + Atu0246 0.39 +1.9 244,791 + Atu0246 0.41 +0.0 244,799 - Atu0246 0.42 +0.6 244,799 - Atu0246 0.42 +1.4 244,891 - Atu0246 0.60 +0.7 244,905 + Atu0246 0.63 +1.2 244,931 - Atu0246 0.68 +0.6 244,931 - Atu0246 0.68 +1.7 244,946 + Atu0246 0.71 +0.1 244,959 + Atu0246 0.73 -0.6 244,994 + Atu0246 0.80 -0.1 245,031 + Atu0246 0.87 +1.1 245,109 + -0.1 245,109 + +0.1 245,109 + -0.7 245,117 - +0.6 245,268 - Atu0247 0.15 +0.8 245,311 - Atu0247 0.19 -0.7 245,425 + Atu0247 0.29 -0.5 245,426 + Atu0247 0.29 -3.5 245,434 - Atu0247 0.30 -0.7 245,459 + Atu0247 0.32 +0.6 245,487 + Atu0247 0.35 -0.1 245,493 - Atu0247 0.35 -2.0 245,500 + Atu0247 0.36 +0.1 245,539 + Atu0247 0.40 +0.3 245,565 + Atu0247 0.42 -1.7 245,573 - Atu0247 0.43 +0.6 245,573 - Atu0247 0.43 -1.9 245,728 + Atu0247 0.57 -0.4 245,739 - Atu0247 0.58 -0.9 245,740 + Atu0247 0.58 -0.7 245,862 + Atu0247 0.70 -1.4 245,865 - Atu0247 0.70 -0.4 245,895 - Atu0247 0.73 +1.8 245,899 + Atu0247 0.73 +0.6 245,906 + Atu0247 0.74 -0.8 245,983 - Atu0247 0.81 +0.9 245,985 + Atu0247 0.81 +0.3 246,033 - Atu0247 0.86 -0.1 246,040 + Atu0247 0.86 -0.5 246,111 + +0.8 246,169 + +0.5 246,169 + +0.8 246,191 - +1.8 246,334 + +1.0 246,354 - -0.2 246,438 + Atu0248 0.10 -0.1 246,445 + Atu0248 0.11 +1.3 246,482 - Atu0248 0.14 -1.0 246,512 + Atu0248 0.17 -1.9 246,576 + Atu0248 0.23 +0.2 246,576 + Atu0248 0.23 -0.3 246,584 - Atu0248 0.24 -0.3 246,589 - Atu0248 0.24 -0.7 246,597 + Atu0248 0.25 -0.1 246,619 - Atu0248 0.27 -0.5 246,665 + Atu0248 0.31 -0.5 246,793 + Atu0248 0.43 +0.3 246,877 - Atu0248 0.50 -0.0 246,916 + Atu0248 0.54 -3.1 246,927 + Atu0248 0.55 -0.1 247,029 - Atu0248 0.64 +0.0 247,068 - Atu0248 0.68 -0.5 247,120 - Atu0248 0.73 -0.3
Or see this region's nucleotide sequence