Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03695 and PS417_03700 are separated by 125 nucleotides PS417_03700 and PS417_03705 are separated by 110 nucleotides
PS417_03695: PS417_03695 - ferrochelatase, at 835,347 to 836,372
_03695
PS417_03700: PS417_03700 - TonB-dependent receptor, at 836,498 to 838,594
_03700
PS417_03705: PS417_03705 - 2-alkenal reductase, at 838,705 to 839,859
_03705
Position (kb) 836
837
838
839 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 836.370 kb on + strand at 836.370 kb on + strand at 836.371 kb on - strand at 836.506 kb on + strand at 836.577 kb on + strand at 836.577 kb on + strand at 836.577 kb on + strand at 836.581 kb on - strand at 836.640 kb on + strand at 836.640 kb on + strand at 836.640 kb on + strand at 836.719 kb on - strand, within PS417_03700 at 836.719 kb on - strand, within PS417_03700 at 836.868 kb on + strand, within PS417_03700 at 836.869 kb on - strand, within PS417_03700 at 836.869 kb on - strand, within PS417_03700 at 836.903 kb on + strand, within PS417_03700 at 836.903 kb on + strand, within PS417_03700 at 836.904 kb on - strand, within PS417_03700 at 836.904 kb on - strand, within PS417_03700 at 836.991 kb on - strand, within PS417_03700 at 837.420 kb on + strand, within PS417_03700 at 837.604 kb on + strand, within PS417_03700 at 837.605 kb on - strand, within PS417_03700 at 837.669 kb on + strand, within PS417_03700 at 837.669 kb on + strand, within PS417_03700 at 838.060 kb on + strand, within PS417_03700 at 838.061 kb on - strand, within PS417_03700 at 838.061 kb on - strand, within PS417_03700 at 838.128 kb on + strand, within PS417_03700 at 838.227 kb on + strand, within PS417_03700 at 838.227 kb on + strand, within PS417_03700 at 838.228 kb on - strand, within PS417_03700 at 838.261 kb on - strand, within PS417_03700 at 838.267 kb on - strand, within PS417_03700 at 838.476 kb on + strand at 838.476 kb on + strand at 838.477 kb on - strand at 838.597 kb on + strand at 838.597 kb on + strand at 838.597 kb on + strand at 838.598 kb on - strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.671 kb on - strand at 838.671 kb on - strand at 838.706 kb on + strand at 838.707 kb on - strand at 838.792 kb on + strand at 838.792 kb on + strand at 839.510 kb on + strand, within PS417_03705
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 836,370 + -0.8 836,370 + -0.5 836,371 - +1.0 836,506 + +0.9 836,577 + +0.5 836,577 + -2.7 836,577 + +0.2 836,581 - -0.2 836,640 + +0.3 836,640 + -0.3 836,640 + -0.6 836,719 - PS417_03700 0.11 +0.1 836,719 - PS417_03700 0.11 +0.3 836,868 + PS417_03700 0.18 +0.7 836,869 - PS417_03700 0.18 +1.7 836,869 - PS417_03700 0.18 +1.0 836,903 + PS417_03700 0.19 +0.6 836,903 + PS417_03700 0.19 -1.1 836,904 - PS417_03700 0.19 +1.7 836,904 - PS417_03700 0.19 -0.2 836,991 - PS417_03700 0.24 +0.3 837,420 + PS417_03700 0.44 +0.1 837,604 + PS417_03700 0.53 +0.2 837,605 - PS417_03700 0.53 -0.1 837,669 + PS417_03700 0.56 -0.5 837,669 + PS417_03700 0.56 +0.6 838,060 + PS417_03700 0.74 -0.3 838,061 - PS417_03700 0.75 -0.9 838,061 - PS417_03700 0.75 +1.9 838,128 + PS417_03700 0.78 +1.5 838,227 + PS417_03700 0.82 +1.1 838,227 + PS417_03700 0.82 +0.3 838,228 - PS417_03700 0.82 -1.4 838,261 - PS417_03700 0.84 -0.2 838,267 - PS417_03700 0.84 +0.2 838,476 + -0.3 838,476 + -0.3 838,477 - +2.9 838,597 + -1.7 838,597 + -0.7 838,597 + +0.0 838,598 - +0.1 838,670 + +2.0 838,670 + -1.6 838,670 + +0.8 838,670 + -0.1 838,670 + +0.4 838,671 - +0.7 838,671 - -1.1 838,706 + +0.1 838,707 - -0.2 838,792 + -1.0 838,792 + -1.7 839,510 + PS417_03705 0.70 -0.7
Or see this region's nucleotide sequence