Experiment: Taped volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03675 and PS417_03680 are separated by 111 nucleotides PS417_03680 and PS417_03685 overlap by 4 nucleotides PS417_03685 and PS417_03690 are separated by 209 nucleotides
PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913
_03675
PS417_03680: PS417_03680 - hypothetical protein, at 833,025 to 833,240
_03680
PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223
_03685
PS417_03690: PS417_03690 - NAD-dependent dehydratase, at 834,433 to 835,332
_03690
Position (kb) 833
834
835 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.334 kb on - strand, within PS417_03675 at 832.340 kb on - strand, within PS417_03675 at 832.513 kb on + strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.559 kb on - strand, within PS417_03675 at 832.652 kb on - strand, within PS417_03675 at 832.913 kb on + strand at 832.974 kb on + strand at 832.974 kb on + strand at 833.332 kb on - strand at 833.968 kb on - strand, within PS417_03685 at 834.055 kb on - strand, within PS417_03685 at 834.238 kb on + strand at 834.248 kb on - strand at 834.268 kb on + strand at 834.269 kb on - strand at 834.269 kb on - strand at 834.295 kb on - strand at 834.335 kb on - strand at 834.385 kb on - strand at 834.386 kb on + strand at 834.392 kb on - strand at 834.416 kb on + strand at 834.567 kb on - strand, within PS417_03690 at 835.025 kb on + strand, within PS417_03690 at 835.026 kb on - strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.090 kb on + strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with no fungus remove 832,333 + PS417_03675 0.39 +0.3 832,333 + PS417_03675 0.39 -3.0 832,333 + PS417_03675 0.39 -0.4 832,334 - PS417_03675 0.40 +1.1 832,340 - PS417_03675 0.40 +0.6 832,513 + PS417_03675 0.58 +0.4 832,514 - PS417_03675 0.58 +1.8 832,514 - PS417_03675 0.58 +0.6 832,559 - PS417_03675 0.63 -0.6 832,652 - PS417_03675 0.73 -3.3 832,913 + +0.7 832,974 + -1.3 832,974 + +2.5 833,332 - -0.8 833,968 - PS417_03685 0.74 -0.7 834,055 - PS417_03685 0.83 +0.4 834,238 + -2.0 834,248 - -0.9 834,268 + +2.9 834,269 - +1.4 834,269 - -0.7 834,295 - -4.3 834,335 - +1.0 834,385 - +2.7 834,386 + -3.3 834,392 - +0.8 834,416 + -2.7 834,567 - PS417_03690 0.15 -0.6 835,025 + PS417_03690 0.66 -0.6 835,026 - PS417_03690 0.66 +0.4 835,029 + PS417_03690 0.66 +0.6 835,029 + PS417_03690 0.66 +0.7 835,029 + PS417_03690 0.66 -0.8 835,029 + PS417_03690 0.66 +0.9 835,029 + PS417_03690 0.66 -0.3 835,029 + PS417_03690 0.66 -0.7 835,029 + PS417_03690 0.66 +2.7 835,030 - PS417_03690 0.66 +0.5 835,030 - PS417_03690 0.66 +2.1 835,030 - PS417_03690 0.66 -0.1 835,030 - PS417_03690 0.66 +1.0 835,030 - PS417_03690 0.66 +0.7 835,030 - PS417_03690 0.66 -0.1 835,030 - PS417_03690 0.66 +1.3 835,030 - PS417_03690 0.66 +0.0 835,030 - PS417_03690 0.66 +1.0 835,030 - PS417_03690 0.66 +2.4 835,090 + PS417_03690 0.73 +0.5 835,091 - PS417_03690 0.73 +0.1 835,091 - PS417_03690 0.73 +0.1 835,091 - PS417_03690 0.73 -3.8 835,091 - PS417_03690 0.73 +1.1 835,092 + PS417_03690 0.73 -0.8 835,092 + PS417_03690 0.73 +0.1 835,093 - PS417_03690 0.73 -1.0 835,093 - PS417_03690 0.73 -0.3
Or see this region's nucleotide sequence