Strain Fitness in Pseudomonas simiae WCS417 around PS417_17685

Experiment: Taped volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17675 and PS417_17680 overlap by 1 nucleotidesPS417_17680 and PS417_17685 are separated by 13 nucleotidesPS417_17685 and PS417_17690 overlap by 4 nucleotides PS417_17675: PS417_17675 - ABC transporter, at 3,858,366 to 3,859,115 _17675 PS417_17680: PS417_17680 - ABC transporter, at 3,859,115 to 3,859,810 _17680 PS417_17685: PS417_17685 - allantoate amidohydrolase, at 3,859,824 to 3,861,092 _17685 PS417_17690: PS417_17690 - amidase, at 3,861,089 to 3,862,492 _17690 Position (kb) 3859 3860 3861 3862Strain fitness (log2 ratio) -1 0 1 2 3at 3859.095 kb on + strandat 3859.133 kb on - strandat 3859.142 kb on + strandat 3859.145 kb on + strandat 3859.452 kb on - strand, within PS417_17680at 3859.452 kb on - strand, within PS417_17680at 3859.712 kb on + strand, within PS417_17680at 3859.712 kb on + strand, within PS417_17680at 3859.830 kb on - strandat 3860.039 kb on + strand, within PS417_17685at 3860.285 kb on + strand, within PS417_17685at 3861.197 kb on + strandat 3861.507 kb on - strand, within PS417_17690at 3861.684 kb on - strand, within PS417_17690

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with no fungus
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3,859,095 + +0.4
3,859,133 - -0.5
3,859,142 + +0.1
3,859,145 + +0.3
3,859,452 - PS417_17680 0.48 +0.3
3,859,452 - PS417_17680 0.48 +2.1
3,859,712 + PS417_17680 0.86 +0.3
3,859,712 + PS417_17680 0.86 -1.7
3,859,830 - +0.7
3,860,039 + PS417_17685 0.17 +3.1
3,860,285 + PS417_17685 0.36 +0.7
3,861,197 + -1.2
3,861,507 - PS417_17690 0.30 -0.5
3,861,684 - PS417_17690 0.42 -0.1

Or see this region's nucleotide sequence