Strain Fitness in Pseudomonas simiae WCS417 around PS417_05765

Experiment: Taped volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05755 and PS417_05760 overlap by 1 nucleotidesPS417_05760 and PS417_05765 are separated by 52 nucleotidesPS417_05765 and PS417_05775 are separated by 127 nucleotides PS417_05755: PS417_05755 - tail protein, at 1,287,420 to 1,288,586 _05755 PS417_05760: PS417_05760 - phage tail protein, at 1,288,586 to 1,289,092 _05760 PS417_05765: PS417_05765 - hypothetical protein, at 1,289,145 to 1,289,717 _05765 PS417_05775: PS417_05775 - tail tape measure protein, at 1,289,845 to 1,291,305 _05775 Position (kb) 1289 1290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1288.197 kb on + strand, within PS417_05755at 1288.197 kb on + strand, within PS417_05755at 1288.198 kb on - strand, within PS417_05755at 1288.270 kb on - strand, within PS417_05755at 1288.432 kb on - strandat 1288.432 kb on - strand, within PS417_05755at 1288.464 kb on + strand, within PS417_05755at 1288.530 kb on + strandat 1288.531 kb on - strandat 1288.531 kb on - strandat 1288.592 kb on - strandat 1288.592 kb on - strandat 1288.871 kb on + strand, within PS417_05760at 1288.872 kb on - strand, within PS417_05760at 1288.872 kb on - strand, within PS417_05760at 1288.880 kb on + strand, within PS417_05760at 1288.881 kb on - strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1288.976 kb on + strand, within PS417_05760at 1289.019 kb on + strand, within PS417_05760at 1289.020 kb on - strand, within PS417_05760at 1289.020 kb on - strand, within PS417_05760at 1289.020 kb on - strand, within PS417_05760at 1289.123 kb on + strandat 1289.124 kb on - strandat 1289.124 kb on - strandat 1289.140 kb on - strandat 1289.235 kb on + strand, within PS417_05765at 1289.235 kb on + strand, within PS417_05765at 1289.235 kb on + strand, within PS417_05765at 1289.238 kb on + strand, within PS417_05765at 1289.239 kb on - strand, within PS417_05765at 1289.361 kb on + strand, within PS417_05765at 1289.362 kb on - strand, within PS417_05765at 1289.379 kb on + strand, within PS417_05765at 1289.380 kb on - strand, within PS417_05765at 1289.380 kb on - strand, within PS417_05765at 1289.383 kb on + strand, within PS417_05765at 1289.383 kb on + strand, within PS417_05765at 1289.383 kb on + strand, within PS417_05765at 1289.384 kb on - strand, within PS417_05765at 1289.384 kb on - strand, within PS417_05765at 1289.837 kb on + strandat 1289.837 kb on + strandat 1289.838 kb on - strandat 1289.857 kb on - strandat 1289.860 kb on + strandat 1290.343 kb on - strand, within PS417_05775at 1290.360 kb on + strand, within PS417_05775at 1290.369 kb on + strand, within PS417_05775

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with no fungus
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1,288,197 + PS417_05755 0.67 +3.9
1,288,197 + PS417_05755 0.67 +1.4
1,288,198 - PS417_05755 0.67 +0.1
1,288,270 - PS417_05755 0.73 -0.1
1,288,432 - +2.1
1,288,432 - PS417_05755 0.87 -0.7
1,288,464 + PS417_05755 0.89 +0.3
1,288,530 + +1.7
1,288,531 - +0.2
1,288,531 - +0.9
1,288,592 - +0.4
1,288,592 - +1.2
1,288,871 + PS417_05760 0.56 -0.0
1,288,872 - PS417_05760 0.56 +0.6
1,288,872 - PS417_05760 0.56 -0.3
1,288,880 + PS417_05760 0.58 -0.6
1,288,881 - PS417_05760 0.58 -2.9
1,288,976 + PS417_05760 0.77 -1.8
1,288,976 + PS417_05760 0.77 -0.7
1,288,976 + PS417_05760 0.77 +2.2
1,288,976 + PS417_05760 0.77 +0.7
1,289,019 + PS417_05760 0.85 -0.5
1,289,020 - PS417_05760 0.86 +1.3
1,289,020 - PS417_05760 0.86 -1.3
1,289,020 - PS417_05760 0.86 -1.8
1,289,123 + -0.6
1,289,124 - +0.8
1,289,124 - +0.2
1,289,140 - -0.1
1,289,235 + PS417_05765 0.16 -1.4
1,289,235 + PS417_05765 0.16 -0.6
1,289,235 + PS417_05765 0.16 -0.1
1,289,238 + PS417_05765 0.16 -0.4
1,289,239 - PS417_05765 0.16 -1.5
1,289,361 + PS417_05765 0.38 +0.9
1,289,362 - PS417_05765 0.38 -0.0
1,289,379 + PS417_05765 0.41 -0.6
1,289,380 - PS417_05765 0.41 -1.3
1,289,380 - PS417_05765 0.41 +1.0
1,289,383 + PS417_05765 0.42 -2.2
1,289,383 + PS417_05765 0.42 +0.3
1,289,383 + PS417_05765 0.42 -1.5
1,289,384 - PS417_05765 0.42 -0.9
1,289,384 - PS417_05765 0.42 -0.8
1,289,837 + -2.0
1,289,837 + +0.0
1,289,838 - +0.3
1,289,857 - +1.1
1,289,860 + -0.6
1,290,343 - PS417_05775 0.34 -0.1
1,290,360 + PS417_05775 0.35 -0.0
1,290,369 + PS417_05775 0.36 +2.5

Or see this region's nucleotide sequence