Strain Fitness in Pseudomonas simiae WCS417 around PS417_03690

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_03685 and PS417_03690 are separated by 209 nucleotidesPS417_03690 and PS417_03695 are separated by 14 nucleotides PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223 _03685 PS417_03690: PS417_03690 - NAD-dependent dehydratase, at 834,433 to 835,332 _03690 PS417_03695: PS417_03695 - ferrochelatase, at 835,347 to 836,372 _03695 Position (kb) 834 835 836Strain fitness (log2 ratio) -2 -1 0 1 2at 833.968 kb on - strand, within PS417_03685at 834.055 kb on - strand, within PS417_03685at 834.238 kb on + strandat 834.248 kb on - strandat 834.268 kb on + strandat 834.269 kb on - strandat 834.269 kb on - strandat 834.295 kb on - strandat 834.335 kb on - strandat 834.385 kb on - strandat 834.386 kb on + strandat 834.392 kb on - strandat 834.416 kb on + strandat 834.567 kb on - strand, within PS417_03690at 835.025 kb on + strand, within PS417_03690at 835.026 kb on - strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.029 kb on + strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.030 kb on - strand, within PS417_03690at 835.090 kb on + strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.091 kb on - strand, within PS417_03690at 835.092 kb on + strand, within PS417_03690at 835.092 kb on + strand, within PS417_03690at 835.093 kb on - strand, within PS417_03690at 835.093 kb on - strand, within PS417_03690at 835.330 kb on + strandat 835.336 kb on + strandat 835.336 kb on + strandat 835.336 kb on + strandat 835.337 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
remove
833,968 - PS417_03685 0.74 -0.4
834,055 - PS417_03685 0.83 -1.5
834,238 + -1.9
834,248 - -1.4
834,268 + +0.1
834,269 - +1.9
834,269 - -0.2
834,295 - -0.3
834,335 - -1.3
834,385 - -0.3
834,386 + -0.1
834,392 - +1.0
834,416 + -2.7
834,567 - PS417_03690 0.15 -0.6
835,025 + PS417_03690 0.66 +0.8
835,026 - PS417_03690 0.66 -0.1
835,029 + PS417_03690 0.66 -0.8
835,029 + PS417_03690 0.66 -0.8
835,029 + PS417_03690 0.66 -1.8
835,029 + PS417_03690 0.66 -0.5
835,029 + PS417_03690 0.66 -0.7
835,029 + PS417_03690 0.66 -0.7
835,029 + PS417_03690 0.66 +1.5
835,030 - PS417_03690 0.66 +0.3
835,030 - PS417_03690 0.66 +2.1
835,030 - PS417_03690 0.66 +0.4
835,030 - PS417_03690 0.66 -0.9
835,030 - PS417_03690 0.66 -0.9
835,030 - PS417_03690 0.66 -0.5
835,030 - PS417_03690 0.66 -0.0
835,030 - PS417_03690 0.66 +0.0
835,030 - PS417_03690 0.66 -0.6
835,030 - PS417_03690 0.66 -1.3
835,090 + PS417_03690 0.73 +0.8
835,091 - PS417_03690 0.73 -0.4
835,091 - PS417_03690 0.73 +0.3
835,091 - PS417_03690 0.73 +0.8
835,091 - PS417_03690 0.73 -0.1
835,092 + PS417_03690 0.73 -2.0
835,092 + PS417_03690 0.73 +0.1
835,093 - PS417_03690 0.73 -0.4
835,093 - PS417_03690 0.73 -0.3
835,330 + -1.0
835,336 + +1.7
835,336 + +1.1
835,336 + +2.5
835,337 - +0.6

Or see this region's nucleotide sequence