Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23520 and PS417_23525 are separated by 54 nucleotides PS417_23525 and PS417_23530 overlap by 32 nucleotides
PS417_23520: PS417_23520 - cysteine biosynthesis protein CysZ, at 5,088,873 to 5,089,640
_23520
PS417_23525: PS417_23525 - glycoside hydrolase, at 5,089,695 to 5,090,897
_23525
PS417_23530: PS417_23530 - 1,2-oxophytodienoate reductase, at 5,090,866 to 5,091,969
_23530
Position (kb) 5089
5090
5091 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5088.736 kb on - strand at 5088.736 kb on - strand at 5088.751 kb on - strand at 5089.003 kb on - strand, within PS417_23520 at 5089.081 kb on - strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.193 kb on - strand, within PS417_23520 at 5089.193 kb on - strand, within PS417_23520 at 5089.639 kb on - strand at 5089.981 kb on - strand, within PS417_23525 at 5089.981 kb on - strand, within PS417_23525 at 5090.080 kb on - strand, within PS417_23525 at 5090.080 kb on - strand, within PS417_23525 at 5090.127 kb on + strand, within PS417_23525 at 5090.128 kb on - strand, within PS417_23525 at 5090.145 kb on - strand, within PS417_23525 at 5090.300 kb on - strand, within PS417_23525 at 5090.326 kb on - strand, within PS417_23525 at 5090.326 kb on - strand, within PS417_23525 at 5090.397 kb on + strand, within PS417_23525 at 5090.642 kb on + strand, within PS417_23525 at 5090.643 kb on - strand, within PS417_23525 at 5090.656 kb on - strand, within PS417_23525 at 5090.665 kb on + strand, within PS417_23525 at 5090.666 kb on - strand, within PS417_23525 at 5090.666 kb on - strand, within PS417_23525 at 5090.867 kb on + strand at 5090.867 kb on + strand at 5090.868 kb on - strand at 5090.971 kb on + strand at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.278 kb on + strand, within PS417_23530 at 5091.279 kb on - strand, within PS417_23530 at 5091.279 kb on - strand, within PS417_23530 at 5091.449 kb on + strand, within PS417_23530 at 5091.603 kb on - strand, within PS417_23530 at 5091.694 kb on + strand, within PS417_23530 at 5091.842 kb on + strand, within PS417_23530
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 5,088,736 - +0.2 5,088,736 - +0.8 5,088,751 - -0.4 5,089,003 - PS417_23520 0.17 +1.4 5,089,081 - PS417_23520 0.27 -0.3 5,089,192 + PS417_23520 0.42 +0.9 5,089,192 + PS417_23520 0.42 +0.6 5,089,192 + PS417_23520 0.42 -1.3 5,089,192 + PS417_23520 0.42 +0.8 5,089,193 - PS417_23520 0.42 +0.1 5,089,193 - PS417_23520 0.42 -0.5 5,089,639 - +1.9 5,089,981 - PS417_23525 0.24 -0.1 5,089,981 - PS417_23525 0.24 +0.0 5,090,080 - PS417_23525 0.32 -2.5 5,090,080 - PS417_23525 0.32 +0.5 5,090,127 + PS417_23525 0.36 -0.9 5,090,128 - PS417_23525 0.36 +0.2 5,090,145 - PS417_23525 0.37 -2.2 5,090,300 - PS417_23525 0.50 -0.2 5,090,326 - PS417_23525 0.52 -1.2 5,090,326 - PS417_23525 0.52 -0.2 5,090,397 + PS417_23525 0.58 -0.2 5,090,642 + PS417_23525 0.79 -0.2 5,090,643 - PS417_23525 0.79 -1.2 5,090,656 - PS417_23525 0.80 +1.3 5,090,665 + PS417_23525 0.81 -3.1 5,090,666 - PS417_23525 0.81 -1.4 5,090,666 - PS417_23525 0.81 +0.4 5,090,867 + +2.4 5,090,867 + -0.6 5,090,868 - +0.3 5,090,971 + -0.5 5,091,278 + PS417_23530 0.37 -0.0 5,091,278 + PS417_23530 0.37 +0.3 5,091,278 + PS417_23530 0.37 +2.2 5,091,278 + PS417_23530 0.37 +0.1 5,091,279 - PS417_23530 0.37 -0.9 5,091,279 - PS417_23530 0.37 +0.0 5,091,449 + PS417_23530 0.53 +0.6 5,091,603 - PS417_23530 0.67 -1.4 5,091,694 + PS417_23530 0.75 -2.8 5,091,842 + PS417_23530 0.88 -0.1
Or see this region's nucleotide sequence