Strain Fitness in Pseudomonas simiae WCS417 around PS417_23035

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23025 and PS417_23030 are separated by 136 nucleotidesPS417_23030 and PS417_23035 are separated by 2 nucleotidesPS417_23035 and PS417_23040 are separated by 179 nucleotides PS417_23025: PS417_23025 - murein transglycosylase, at 4,988,622 to 4,990,082 _23025 PS417_23030: PS417_23030 - PTS glucose transporter subunit IIB, at 4,990,219 to 4,990,497 _23030 PS417_23035: PS417_23035 - D-trehalose PTS system, I, HPr, and IIA components (from data), at 4,990,500 to 4,993,016 _23035 PS417_23040: PS417_23040 - D-trehalose outer membrane porin (from data), at 4,993,196 to 4,994,416 _23040 Position (kb) 4990 4991 4992 4993 4994Strain fitness (log2 ratio) -2 -1 0 1 2at 4989.696 kb on + strand, within PS417_23025at 4989.891 kb on + strand, within PS417_23025at 4989.892 kb on - strand, within PS417_23025at 4989.963 kb on + strandat 4989.963 kb on + strandat 4989.974 kb on + strandat 4989.974 kb on + strandat 4989.975 kb on - strandat 4989.997 kb on + strandat 4989.997 kb on + strandat 4990.080 kb on + strandat 4990.080 kb on + strandat 4990.081 kb on - strandat 4990.103 kb on - strandat 4990.108 kb on + strandat 4990.220 kb on + strandat 4990.871 kb on - strand, within PS417_23035at 4991.145 kb on + strand, within PS417_23035at 4991.200 kb on + strand, within PS417_23035at 4991.200 kb on + strand, within PS417_23035at 4991.201 kb on - strand, within PS417_23035at 4992.386 kb on + strand, within PS417_23035at 4992.418 kb on + strand, within PS417_23035at 4992.822 kb on - strandat 4993.060 kb on - strandat 4993.060 kb on - strandat 4993.197 kb on + strandat 4993.332 kb on + strand, within PS417_23040at 4993.332 kb on + strand, within PS417_23040at 4993.333 kb on - strand, within PS417_23040at 4993.333 kb on - strand, within PS417_23040at 4993.333 kb on - strand, within PS417_23040at 4993.338 kb on + strand, within PS417_23040at 4993.338 kb on + strand, within PS417_23040at 4993.338 kb on + strand, within PS417_23040at 4993.339 kb on - strand, within PS417_23040at 4993.339 kb on - strand, within PS417_23040at 4993.561 kb on - strand, within PS417_23040at 4993.664 kb on - strand, within PS417_23040at 4993.666 kb on - strand, within PS417_23040at 4993.800 kb on + strand, within PS417_23040at 4993.800 kb on + strand, within PS417_23040at 4993.801 kb on - strand, within PS417_23040at 4993.801 kb on - strand, within PS417_23040at 4993.806 kb on - strand, within PS417_23040at 4993.806 kb on - strand, within PS417_23040at 4993.876 kb on - strand, within PS417_23040at 4993.920 kb on + strand, within PS417_23040at 4993.920 kb on + strand, within PS417_23040at 4993.980 kb on + strand, within PS417_23040at 4993.981 kb on - strand, within PS417_23040at 4993.996 kb on + strand, within PS417_23040at 4994.009 kb on - strand, within PS417_23040at 4994.016 kb on + strand, within PS417_23040at 4994.016 kb on + strand, within PS417_23040

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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4,989,696 + PS417_23025 0.74 +1.1
4,989,891 + PS417_23025 0.87 -2.0
4,989,892 - PS417_23025 0.87 -2.7
4,989,963 + -0.7
4,989,963 + -1.0
4,989,974 + +0.0
4,989,974 + -2.0
4,989,975 - -1.1
4,989,997 + -0.7
4,989,997 + -1.4
4,990,080 + -0.4
4,990,080 + +0.1
4,990,081 - +1.0
4,990,103 - -0.7
4,990,108 + -0.7
4,990,220 + -0.1
4,990,871 - PS417_23035 0.15 +1.2
4,991,145 + PS417_23035 0.26 +1.9
4,991,200 + PS417_23035 0.28 +0.9
4,991,200 + PS417_23035 0.28 +0.9
4,991,201 - PS417_23035 0.28 +0.3
4,992,386 + PS417_23035 0.75 +0.2
4,992,418 + PS417_23035 0.76 -2.1
4,992,822 - +0.3
4,993,060 - -2.3
4,993,060 - -0.2
4,993,197 + +0.1
4,993,332 + PS417_23040 0.11 +0.4
4,993,332 + PS417_23040 0.11 +0.1
4,993,333 - PS417_23040 0.11 +0.4
4,993,333 - PS417_23040 0.11 +0.1
4,993,333 - PS417_23040 0.11 -2.2
4,993,338 + PS417_23040 0.12 -0.4
4,993,338 + PS417_23040 0.12 +0.4
4,993,338 + PS417_23040 0.12 +1.4
4,993,339 - PS417_23040 0.12 -0.7
4,993,339 - PS417_23040 0.12 +0.1
4,993,561 - PS417_23040 0.30 -0.4
4,993,664 - PS417_23040 0.38 -0.6
4,993,666 - PS417_23040 0.38 +0.2
4,993,800 + PS417_23040 0.49 +0.3
4,993,800 + PS417_23040 0.49 -1.1
4,993,801 - PS417_23040 0.50 -1.1
4,993,801 - PS417_23040 0.50 -0.2
4,993,806 - PS417_23040 0.50 +0.2
4,993,806 - PS417_23040 0.50 -2.0
4,993,876 - PS417_23040 0.56 -0.6
4,993,920 + PS417_23040 0.59 +0.3
4,993,920 + PS417_23040 0.59 +1.0
4,993,980 + PS417_23040 0.64 -0.2
4,993,981 - PS417_23040 0.64 -0.3
4,993,996 + PS417_23040 0.66 -1.7
4,994,009 - PS417_23040 0.67 +0.8
4,994,016 + PS417_23040 0.67 -0.0
4,994,016 + PS417_23040 0.67 +0.4

Or see this region's nucleotide sequence