Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01295 and PS417_01300 are separated by 126 nucleotides PS417_01300 and PS417_01305 are separated by 26 nucleotides PS417_01305 and PS417_01310 overlap by 4 nucleotides
PS417_01295: PS417_01295 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 280,798 to 281,634
_01295
PS417_01300: PS417_01300 - thioesterase, at 281,761 to 282,216
_01300
PS417_01305: PS417_01305 - Fis family transcriptional regulator, at 282,243 to 283,619
_01305
PS417_01310: PS417_01310 - ATPase, at 283,616 to 285,424
_01310
Position (kb) 282
283
284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.577 kb on - strand at 281.645 kb on - strand at 281.778 kb on - strand at 281.778 kb on - strand at 281.867 kb on + strand, within PS417_01300 at 281.868 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 281.977 kb on - strand, within PS417_01300 at 282.291 kb on + strand at 282.291 kb on + strand at 282.291 kb on + strand at 282.428 kb on + strand at 282.542 kb on + strand at 282.542 kb on + strand, within PS417_01305 at 282.701 kb on - strand, within PS417_01305 at 282.703 kb on + strand, within PS417_01305 at 282.704 kb on - strand, within PS417_01305 at 282.704 kb on - strand, within PS417_01305 at 282.704 kb on - strand, within PS417_01305 at 283.315 kb on + strand, within PS417_01305 at 283.619 kb on + strand at 283.619 kb on + strand at 283.619 kb on + strand at 283.620 kb on - strand at 283.620 kb on - strand at 283.620 kb on - strand at 283.800 kb on + strand, within PS417_01310 at 283.863 kb on + strand, within PS417_01310 at 283.863 kb on + strand, within PS417_01310 at 283.863 kb on + strand, within PS417_01310
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 281,577 - -0.2 281,645 - -1.5 281,778 - -0.1 281,778 - +0.1 281,867 + PS417_01300 0.23 +1.2 281,868 - PS417_01300 0.23 -1.0 281,977 - PS417_01300 0.47 -0.7 281,977 - PS417_01300 0.47 -1.4 281,977 - PS417_01300 0.47 +0.8 281,977 - PS417_01300 0.47 +0.0 281,977 - PS417_01300 0.47 +0.9 282,291 + -1.2 282,291 + +0.5 282,291 + +0.9 282,428 + -0.9 282,542 + -0.7 282,542 + PS417_01305 0.22 -0.9 282,701 - PS417_01305 0.33 -0.5 282,703 + PS417_01305 0.33 -1.2 282,704 - PS417_01305 0.33 +0.3 282,704 - PS417_01305 0.33 -0.8 282,704 - PS417_01305 0.33 -1.9 283,315 + PS417_01305 0.78 -2.3 283,619 + -2.1 283,619 + -0.1 283,619 + -1.7 283,620 - +0.8 283,620 - -1.0 283,620 - +0.3 283,800 + PS417_01310 0.10 +2.6 283,863 + PS417_01310 0.14 +0.5 283,863 + PS417_01310 0.14 +0.4 283,863 + PS417_01310 0.14 +0.0
Or see this region's nucleotide sequence