Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03055 and PS417_03060 overlap by 4 nucleotides PS417_03060 and PS417_03065 are separated by 72 nucleotides PS417_03065 and PS417_03070 are separated by 125 nucleotides
PS417_03055: PS417_03055 - histidine kinase, at 702,722 to 705,448
_03055
PS417_03060: PS417_03060 - pilus assembly protein TadE, at 705,445 to 705,888
_03060
PS417_03065: PS417_03065 - peptidase A24, at 705,961 to 706,410
_03065
PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324
_03070
Position (kb) 705
706 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 704.667 kb on + strand, within PS417_03055 at 704.668 kb on - strand, within PS417_03055 at 704.668 kb on - strand, within PS417_03055 at 704.712 kb on + strand, within PS417_03055 at 704.874 kb on + strand, within PS417_03055 at 704.883 kb on + strand, within PS417_03055 at 705.289 kb on - strand at 705.530 kb on - strand, within PS417_03060 at 705.530 kb on - strand, within PS417_03060 at 705.536 kb on + strand, within PS417_03060 at 705.537 kb on - strand, within PS417_03060 at 705.587 kb on + strand, within PS417_03060 at 705.588 kb on - strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.597 kb on + strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.598 kb on - strand, within PS417_03060 at 705.690 kb on - strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.788 kb on + strand, within PS417_03060 at 705.789 kb on - strand, within PS417_03060 at 705.803 kb on + strand, within PS417_03060 at 705.913 kb on + strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.914 kb on - strand at 705.928 kb on + strand at 705.928 kb on + strand at 705.929 kb on - strand at 706.015 kb on - strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.075 kb on + strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.076 kb on - strand, within PS417_03065 at 706.169 kb on - strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.230 kb on + strand, within PS417_03065 at 706.370 kb on + strand at 706.371 kb on - strand at 706.391 kb on - strand at 706.426 kb on - strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.431 kb on + strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.432 kb on - strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.435 kb on + strand at 706.436 kb on - strand at 706.451 kb on - strand at 706.457 kb on - strand at 706.463 kb on - strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.469 kb on + strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.470 kb on - strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.473 kb on + strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.474 kb on - strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.477 kb on + strand at 706.478 kb on - strand at 706.547 kb on + strand at 706.548 kb on - strand at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.719 kb on - strand, within PS417_03070 at 706.861 kb on - strand, within PS417_03070 at 706.864 kb on - strand, within PS417_03070
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 704,667 + PS417_03055 0.71 -2.0 704,668 - PS417_03055 0.71 -1.3 704,668 - PS417_03055 0.71 +1.0 704,712 + PS417_03055 0.73 -1.1 704,874 + PS417_03055 0.79 -1.1 704,883 + PS417_03055 0.79 -2.4 705,289 - +0.4 705,530 - PS417_03060 0.19 -0.2 705,530 - PS417_03060 0.19 +1.0 705,536 + PS417_03060 0.20 -2.4 705,537 - PS417_03060 0.21 -1.4 705,587 + PS417_03060 0.32 +0.7 705,588 - PS417_03060 0.32 +0.3 705,597 + PS417_03060 0.34 -1.4 705,597 + PS417_03060 0.34 -1.5 705,598 - PS417_03060 0.34 -0.7 705,598 - PS417_03060 0.34 -3.7 705,690 - PS417_03060 0.55 -1.0 705,788 + PS417_03060 0.77 +1.2 705,788 + PS417_03060 0.77 -0.0 705,789 - PS417_03060 0.77 -0.9 705,803 + PS417_03060 0.81 +3.2 705,913 + -1.1 705,914 - -0.1 705,914 - -1.9 705,914 - +1.2 705,928 + -1.3 705,928 + -3.9 705,929 - -0.9 706,015 - PS417_03065 0.12 -0.1 706,075 + PS417_03065 0.25 -0.2 706,075 + PS417_03065 0.25 +0.6 706,076 - PS417_03065 0.26 -1.8 706,076 - PS417_03065 0.26 +0.6 706,169 - PS417_03065 0.46 +0.5 706,230 + PS417_03065 0.60 +0.7 706,230 + PS417_03065 0.60 -0.9 706,370 + -0.8 706,371 - -3.2 706,391 - -0.1 706,426 - -1.7 706,431 + +0.0 706,431 + -0.2 706,431 + -1.9 706,432 - +0.4 706,432 - -0.0 706,432 - -0.3 706,435 + +1.4 706,435 + -1.0 706,435 + +0.8 706,435 + +0.1 706,435 + -0.4 706,436 - +0.6 706,451 - +1.3 706,457 - +0.3 706,463 - +0.5 706,469 + +1.6 706,469 + +1.0 706,469 + +2.7 706,469 + -2.0 706,470 - +0.7 706,470 - -3.4 706,470 - +2.3 706,473 + +1.9 706,473 + -0.3 706,473 + -0.4 706,473 + +2.7 706,473 + +1.8 706,473 + +1.6 706,474 - +0.9 706,474 - +0.3 706,474 - +0.1 706,474 - -0.1 706,474 - -3.4 706,477 + +0.1 706,477 + +0.7 706,477 + +0.2 706,477 + +0.7 706,478 - -0.0 706,547 + +0.7 706,548 - +0.5 706,718 + PS417_03070 0.23 -0.6 706,718 + PS417_03070 0.23 -0.2 706,718 + PS417_03070 0.23 +1.4 706,719 - PS417_03070 0.23 -1.7 706,861 - PS417_03070 0.41 +0.6 706,864 - PS417_03070 0.42 +0.2
Or see this region's nucleotide sequence