Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25755 and PS417_25760 are separated by 43 nucleotides PS417_25760 and PS417_25765 are separated by 214 nucleotides PS417_25765 and PS417_25770 are separated by 18 nucleotides
PS417_25755: PS417_25755 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,559,972 to 5,561,012
_25755
PS417_25760: PS417_25760 - spermidine/putrescine ABC transporter ATP-binding protein, at 5,561,056 to 5,562,168
_25760
PS417_25765: PS417_25765 - transcriptional regulator, at 5,562,383 to 5,563,012
_25765
PS417_25770: PS417_25770 - ABC transporter substrate-binding protein, at 5,563,031 to 5,565,025
_25770
Position (kb) 5561
5562
5563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5560.138 kb on + strand, within PS417_25755 at 5560.327 kb on + strand, within PS417_25755 at 5560.328 kb on - strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.468 kb on + strand, within PS417_25755 at 5560.469 kb on - strand, within PS417_25755 at 5560.469 kb on - strand, within PS417_25755 at 5560.520 kb on - strand, within PS417_25755 at 5560.681 kb on + strand, within PS417_25755 at 5560.834 kb on + strand, within PS417_25755 at 5560.835 kb on - strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand at 5560.882 kb on + strand, within PS417_25755 at 5560.882 kb on + strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5560.883 kb on - strand, within PS417_25755 at 5561.209 kb on + strand, within PS417_25760 at 5561.209 kb on + strand, within PS417_25760 at 5561.209 kb on + strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.210 kb on - strand, within PS417_25760 at 5561.225 kb on + strand, within PS417_25760 at 5561.225 kb on + strand, within PS417_25760 at 5561.226 kb on - strand, within PS417_25760 at 5561.480 kb on + strand, within PS417_25760 at 5561.480 kb on + strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.580 kb on - strand, within PS417_25760 at 5561.894 kb on + strand, within PS417_25760 at 5561.894 kb on + strand, within PS417_25760 at 5561.925 kb on + strand, within PS417_25760 at 5562.111 kb on - strand at 5562.169 kb on - strand at 5562.169 kb on - strand at 5562.208 kb on + strand at 5562.369 kb on - strand at 5562.384 kb on + strand at 5562.385 kb on - strand at 5562.385 kb on - strand at 5562.409 kb on - strand at 5562.436 kb on + strand at 5562.642 kb on + strand, within PS417_25765 at 5562.643 kb on - strand, within PS417_25765 at 5563.033 kb on - strand at 5563.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,560,138 + PS417_25755 0.16 -1.6 5,560,327 + PS417_25755 0.34 -2.3 5,560,328 - PS417_25755 0.34 +2.5 5,560,468 + PS417_25755 0.48 +0.7 5,560,468 + PS417_25755 0.48 -2.7 5,560,468 + PS417_25755 0.48 -1.4 5,560,469 - PS417_25755 0.48 +0.4 5,560,469 - PS417_25755 0.48 -0.2 5,560,520 - PS417_25755 0.53 +2.2 5,560,681 + PS417_25755 0.68 -3.1 5,560,834 + PS417_25755 0.83 -0.7 5,560,835 - PS417_25755 0.83 -3.2 5,560,882 + PS417_25755 0.87 +0.8 5,560,882 + PS417_25755 0.87 +1.4 5,560,882 + +4.0 5,560,882 + PS417_25755 0.87 -0.0 5,560,882 + PS417_25755 0.87 +0.3 5,560,883 - PS417_25755 0.88 -0.9 5,560,883 - PS417_25755 0.88 -0.1 5,560,883 - PS417_25755 0.88 -0.7 5,560,883 - PS417_25755 0.88 +1.1 5,561,209 + PS417_25760 0.14 +0.4 5,561,209 + PS417_25760 0.14 -0.1 5,561,209 + PS417_25760 0.14 -3.6 5,561,210 - PS417_25760 0.14 -0.9 5,561,210 - PS417_25760 0.14 -0.9 5,561,210 - PS417_25760 0.14 +0.4 5,561,225 + PS417_25760 0.15 -0.3 5,561,225 + PS417_25760 0.15 -2.2 5,561,226 - PS417_25760 0.15 -2.3 5,561,480 + PS417_25760 0.38 -0.7 5,561,480 + PS417_25760 0.38 +0.1 5,561,580 - PS417_25760 0.47 -1.2 5,561,580 - PS417_25760 0.47 -3.0 5,561,580 - PS417_25760 0.47 +1.4 5,561,894 + PS417_25760 0.75 -1.1 5,561,894 + PS417_25760 0.75 -2.8 5,561,925 + PS417_25760 0.78 -0.5 5,562,111 - +2.0 5,562,169 - +1.4 5,562,169 - +0.5 5,562,208 + -0.5 5,562,369 - -2.7 5,562,384 + -2.5 5,562,385 - +0.6 5,562,385 - -1.4 5,562,409 - -3.4 5,562,436 + +4.0 5,562,642 + PS417_25765 0.41 -0.0 5,562,643 - PS417_25765 0.41 +0.6 5,563,033 - -0.3 5,563,033 - -2.2
Or see this region's nucleotide sequence