Strain Fitness in Pseudomonas simiae WCS417 around PS417_23550

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23545 and PS417_23550 are separated by 109 nucleotidesPS417_23550 and PS417_23555 are separated by 192 nucleotidesPS417_23555 and PS417_23560 are separated by 34 nucleotides PS417_23545: PS417_23545 - gamma-glutamyl kinase, at 5,093,255 to 5,094,373 _23545 PS417_23550: PS417_23550 - GTPase CgtA, at 5,094,483 to 5,095,706 _23550 PS417_23555: PS417_23555 - 50S ribosomal protein L27, at 5,095,899 to 5,096,156 _23555 PS417_23560: PS417_23560 - 50S ribosomal protein L21, at 5,096,191 to 5,096,505 _23560 Position (kb) 5094 5095 5096Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5094.335 kb on + strandat 5094.386 kb on + strandat 5094.387 kb on - strandat 5094.387 kb on - strandat 5094.387 kb on - strandat 5094.496 kb on + strandat 5095.754 kb on - strandat 5095.754 kb on - strandat 5095.820 kb on - strandat 5095.820 kb on - strandat 5096.554 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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5,094,335 + -5.5
5,094,386 + -2.7
5,094,387 - -4.3
5,094,387 - -1.2
5,094,387 - -0.3
5,094,496 + +0.4
5,095,754 - -2.9
5,095,754 - +1.0
5,095,820 - -2.4
5,095,820 - -1.3
5,096,554 - -0.8

Or see this region's nucleotide sequence