Strain Fitness in Pseudomonas simiae WCS417 around PS417_18315

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18300 and PS417_18305 are separated by 244 nucleotidesPS417_18305 and PS417_18310 are separated by 90 nucleotidesPS417_18310 and PS417_18315 overlap by 20 nucleotidesPS417_18315 and PS417_18320 are separated by 3 nucleotides PS417_18300: PS417_18300 - transcriptional regulator, at 3,989,889 to 3,990,572 _18300 PS417_18305: PS417_18305 - tRNA-Pro, at 3,990,817 to 3,990,893 _18305 PS417_18310: PS417_18310 - hypothetical protein, at 3,990,984 to 3,991,340 _18310 PS417_18315: PS417_18315 - integration host factor subunit alpha, at 3,991,321 to 3,991,623 _18315 PS417_18320: PS417_18320 - phenylalanyl-tRNA synthetase, at 3,991,627 to 3,994,005 _18320 Position (kb) 3991 3992Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3990.426 kb on + strand, within PS417_18300at 3990.460 kb on + strand, within PS417_18300at 3990.534 kb on + strandat 3991.123 kb on + strand, within PS417_18310at 3991.172 kb on - strand, within PS417_18310at 3991.240 kb on - strand, within PS417_18310

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,990,426 + PS417_18300 0.79 -3.8
3,990,460 + PS417_18300 0.83 -0.3
3,990,534 + -1.1
3,991,123 + PS417_18310 0.39 -3.0
3,991,172 - PS417_18310 0.53 -0.6
3,991,240 - PS417_18310 0.72 +0.2

Or see this region's nucleotide sequence