Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05540 and PS417_05545 are separated by 157 nucleotides PS417_05545 and PS417_05550 overlap by 4 nucleotides PS417_05550 and PS417_05555 overlap by 1 nucleotides
PS417_05540: PS417_05540 - histidine kinase, at 1,246,320 to 1,248,221
_05540
PS417_05545: PS417_05545 - amino acid ABC transporter ATP-binding protein, at 1,248,379 to 1,249,113
_05545
PS417_05550: PS417_05550 - amino acid ABC transporter permease, at 1,249,110 to 1,249,781
_05550
PS417_05555: PS417_05555 - amino acid ABC transporter permease, at 1,249,781 to 1,250,527
_05555
Position (kb) 1248
1249
1250 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1247.470 kb on + strand, within PS417_05540 at 1247.473 kb on + strand, within PS417_05540 at 1247.473 kb on + strand, within PS417_05540 at 1247.695 kb on + strand, within PS417_05540 at 1247.696 kb on - strand, within PS417_05540 at 1247.696 kb on - strand at 1247.801 kb on - strand, within PS417_05540 at 1247.823 kb on - strand at 1247.860 kb on + strand, within PS417_05540 at 1247.860 kb on + strand, within PS417_05540 at 1247.860 kb on + strand, within PS417_05540 at 1247.860 kb on + strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.861 kb on - strand, within PS417_05540 at 1247.990 kb on - strand, within PS417_05540 at 1247.990 kb on - strand, within PS417_05540 at 1247.996 kb on - strand, within PS417_05540 at 1248.076 kb on + strand at 1248.080 kb on - strand at 1248.580 kb on + strand, within PS417_05545 at 1248.580 kb on + strand, within PS417_05545 at 1248.581 kb on - strand, within PS417_05545 at 1248.590 kb on + strand, within PS417_05545 at 1248.590 kb on - strand at 1248.590 kb on - strand, within PS417_05545 at 1248.800 kb on - strand, within PS417_05545 at 1248.800 kb on - strand, within PS417_05545 at 1249.083 kb on - strand at 1249.095 kb on + strand at 1249.096 kb on - strand at 1249.096 kb on - strand at 1249.375 kb on + strand, within PS417_05550 at 1249.375 kb on + strand, within PS417_05550 at 1249.376 kb on - strand at 1249.559 kb on - strand, within PS417_05550 at 1249.600 kb on + strand, within PS417_05550 at 1249.610 kb on - strand, within PS417_05550 at 1249.610 kb on - strand, within PS417_05550 at 1249.782 kb on + strand at 1249.783 kb on - strand at 1249.872 kb on + strand, within PS417_05555 at 1249.872 kb on + strand, within PS417_05555 at 1249.873 kb on - strand, within PS417_05555 at 1250.062 kb on - strand, within PS417_05555
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,247,470 + PS417_05540 0.60 +0.5 1,247,473 + PS417_05540 0.61 -1.4 1,247,473 + PS417_05540 0.61 +3.3 1,247,695 + PS417_05540 0.72 +0.8 1,247,696 - PS417_05540 0.72 +0.6 1,247,696 - +0.2 1,247,801 - PS417_05540 0.78 -0.1 1,247,823 - +2.0 1,247,860 + PS417_05540 0.81 -1.8 1,247,860 + PS417_05540 0.81 +1.5 1,247,860 + PS417_05540 0.81 -0.5 1,247,860 + PS417_05540 0.81 -1.6 1,247,861 - PS417_05540 0.81 +3.0 1,247,861 - PS417_05540 0.81 -0.9 1,247,861 - PS417_05540 0.81 -0.9 1,247,861 - PS417_05540 0.81 -0.7 1,247,990 - PS417_05540 0.88 -1.0 1,247,990 - PS417_05540 0.88 -1.7 1,247,996 - PS417_05540 0.88 +2.7 1,248,076 + +2.1 1,248,080 - -1.2 1,248,580 + PS417_05545 0.27 +1.3 1,248,580 + PS417_05545 0.27 -0.1 1,248,581 - PS417_05545 0.27 -0.7 1,248,590 + PS417_05545 0.29 +0.5 1,248,590 - +4.2 1,248,590 - PS417_05545 0.29 -0.4 1,248,800 - PS417_05545 0.57 -3.9 1,248,800 - PS417_05545 0.57 -0.0 1,249,083 - -1.1 1,249,095 + -0.0 1,249,096 - +0.1 1,249,096 - -0.0 1,249,375 + PS417_05550 0.39 -1.3 1,249,375 + PS417_05550 0.39 +0.9 1,249,376 - +0.6 1,249,559 - PS417_05550 0.67 +1.5 1,249,600 + PS417_05550 0.73 -2.8 1,249,610 - PS417_05550 0.74 +1.3 1,249,610 - PS417_05550 0.74 -0.4 1,249,782 + +1.6 1,249,783 - +0.4 1,249,872 + PS417_05555 0.12 +0.6 1,249,872 + PS417_05555 0.12 -0.0 1,249,873 - PS417_05555 0.12 +0.8 1,250,062 - PS417_05555 0.38 -0.3
Or see this region's nucleotide sequence