Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24295 and PS417_24300 are separated by 174 nucleotides PS417_24300 and PS417_24305 are separated by 29 nucleotides PS417_24305 and PS417_24310 are separated by 35 nucleotides PS417_24310 and PS417_24315 are separated by 58 nucleotides
PS417_24295: PS417_24295 - carbon starvation protein A, at 5,272,755 to 5,274,821
_24295
PS417_24300: PS417_24300 - pilus assembly protein, at 5,274,996 to 5,275,364
_24300
PS417_24305: PS417_24305 - DNA repair protein RadA, at 5,275,394 to 5,276,761
_24305
PS417_24310: PS417_24310 - ankyrin, at 5,276,797 to 5,277,336
_24310
PS417_24315: PS417_24315 - catalase, at 5,277,395 to 5,278,936
_24315
Position (kb) 5275
5276
5277 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5274.574 kb on + strand, within PS417_24295 at 5274.574 kb on + strand, within PS417_24295 at 5274.658 kb on + strand at 5274.658 kb on + strand at 5274.661 kb on + strand at 5274.662 kb on - strand at 5274.680 kb on - strand at 5274.680 kb on - strand at 5274.789 kb on + strand at 5274.807 kb on - strand at 5274.813 kb on - strand at 5274.910 kb on - strand at 5274.966 kb on - strand at 5275.109 kb on - strand, within PS417_24300 at 5275.123 kb on + strand, within PS417_24300 at 5275.124 kb on - strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.177 kb on + strand, within PS417_24300 at 5275.178 kb on - strand, within PS417_24300 at 5275.178 kb on - strand, within PS417_24300 at 5275.178 kb on - strand, within PS417_24300 at 5275.199 kb on + strand, within PS417_24300 at 5275.199 kb on + strand, within PS417_24300 at 5275.200 kb on - strand, within PS417_24300 at 5275.200 kb on - strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.201 kb on + strand, within PS417_24300 at 5275.351 kb on + strand at 5275.352 kb on - strand at 5275.352 kb on - strand at 5275.354 kb on + strand at 5275.354 kb on + strand at 5275.355 kb on - strand at 5275.355 kb on - strand at 5275.355 kb on - strand at 5275.846 kb on + strand, within PS417_24305 at 5275.847 kb on - strand, within PS417_24305 at 5276.050 kb on - strand, within PS417_24305 at 5276.063 kb on + strand, within PS417_24305 at 5276.064 kb on - strand, within PS417_24305 at 5276.155 kb on - strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.394 kb on + strand, within PS417_24305 at 5276.395 kb on - strand, within PS417_24305 at 5276.435 kb on + strand, within PS417_24305 at 5276.436 kb on - strand, within PS417_24305 at 5276.689 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.739 kb on + strand at 5276.793 kb on + strand at 5276.794 kb on - strand at 5276.794 kb on - strand at 5276.934 kb on - strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.146 kb on + strand, within PS417_24310 at 5277.176 kb on + strand, within PS417_24310 at 5277.472 kb on - strand at 5277.489 kb on + strand at 5277.489 kb on + strand at 5277.723 kb on + strand, within PS417_24315 at 5277.724 kb on - strand, within PS417_24315
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,274,574 + PS417_24295 0.88 +0.1 5,274,574 + PS417_24295 0.88 +0.1 5,274,658 + -0.0 5,274,658 + +0.4 5,274,661 + +0.1 5,274,662 - -1.9 5,274,680 - +0.4 5,274,680 - -0.4 5,274,789 + +1.6 5,274,807 - +2.0 5,274,813 - +0.0 5,274,910 - -0.4 5,274,966 - +1.0 5,275,109 - PS417_24300 0.31 +0.6 5,275,123 + PS417_24300 0.34 +0.2 5,275,124 - PS417_24300 0.35 -1.3 5,275,177 + PS417_24300 0.49 +0.5 5,275,177 + PS417_24300 0.49 -0.5 5,275,177 + PS417_24300 0.49 -0.1 5,275,177 + PS417_24300 0.49 -1.6 5,275,178 - PS417_24300 0.49 +1.0 5,275,178 - PS417_24300 0.49 +0.4 5,275,178 - PS417_24300 0.49 -0.1 5,275,199 + PS417_24300 0.55 -0.5 5,275,199 + PS417_24300 0.55 -0.3 5,275,200 - PS417_24300 0.55 +0.3 5,275,200 - PS417_24300 0.55 +1.2 5,275,201 + PS417_24300 0.56 +0.5 5,275,201 + PS417_24300 0.56 +0.2 5,275,201 + PS417_24300 0.56 +0.1 5,275,201 + PS417_24300 0.56 +0.2 5,275,201 + PS417_24300 0.56 +0.8 5,275,201 + PS417_24300 0.56 +0.9 5,275,351 + +0.8 5,275,352 - +0.5 5,275,352 - +0.2 5,275,354 + +0.1 5,275,354 + +0.8 5,275,355 - +0.6 5,275,355 - +0.4 5,275,355 - +0.7 5,275,846 + PS417_24305 0.33 -1.0 5,275,847 - PS417_24305 0.33 +0.8 5,276,050 - PS417_24305 0.48 -0.4 5,276,063 + PS417_24305 0.49 +0.8 5,276,064 - PS417_24305 0.49 -1.6 5,276,155 - PS417_24305 0.56 +0.2 5,276,394 + PS417_24305 0.73 -0.2 5,276,394 + PS417_24305 0.73 +1.4 5,276,394 + PS417_24305 0.73 +1.2 5,276,394 + PS417_24305 0.73 +0.7 5,276,394 + PS417_24305 0.73 +1.0 5,276,395 - PS417_24305 0.73 -0.1 5,276,435 + PS417_24305 0.76 +0.7 5,276,436 - PS417_24305 0.76 +0.8 5,276,689 + +2.2 5,276,739 + +0.1 5,276,739 + -1.8 5,276,739 + -0.2 5,276,739 + +0.2 5,276,739 + -0.6 5,276,793 + -0.0 5,276,794 - -0.3 5,276,794 - +0.1 5,276,934 - PS417_24310 0.25 +0.6 5,277,146 + PS417_24310 0.65 -0.0 5,277,146 + PS417_24310 0.65 +0.9 5,277,176 + PS417_24310 0.70 +0.7 5,277,472 - -1.8 5,277,489 + +0.1 5,277,489 + -0.4 5,277,723 + PS417_24315 0.21 +0.2 5,277,724 - PS417_24315 0.21 -0.4
Or see this region's nucleotide sequence