Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01665 and PS417_01670 are separated by 206 nucleotides PS417_01670 and PS417_01675 are separated by 238 nucleotides PS417_01675 and PS417_01680 are separated by 200 nucleotides
PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320
_01665
PS417_01670: PS417_01670 - Fe-S-oxidoreductase, at 367,527 to 367,961
_01670
PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650
_01675
PS417_01680: PS417_01680 - membrane protein, at 370,851 to 373,922
_01680
Position (kb) 368
369
370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 367.323 kb on + strand at 367.536 kb on - strand at 367.582 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.652 kb on + strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.653 kb on - strand, within PS417_01670 at 367.671 kb on - strand, within PS417_01670 at 367.817 kb on + strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.818 kb on - strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.892 kb on + strand, within PS417_01670 at 367.893 kb on - strand, within PS417_01670 at 367.904 kb on - strand, within PS417_01670 at 368.062 kb on - strand at 368.104 kb on + strand at 368.105 kb on - strand at 368.138 kb on + strand at 368.158 kb on - strand at 368.164 kb on + strand at 368.165 kb on - strand at 368.177 kb on + strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.178 kb on - strand at 368.268 kb on + strand at 368.268 kb on + strand at 368.386 kb on + strand at 368.410 kb on + strand at 368.411 kb on - strand at 368.450 kb on - strand, within PS417_01675 at 368.854 kb on + strand, within PS417_01675 at 369.067 kb on + strand, within PS417_01675 at 369.068 kb on - strand, within PS417_01675 at 369.364 kb on + strand, within PS417_01675 at 369.365 kb on - strand, within PS417_01675 at 369.365 kb on - strand, within PS417_01675 at 369.426 kb on - strand, within PS417_01675 at 369.612 kb on + strand, within PS417_01675 at 369.613 kb on - strand, within PS417_01675 at 369.632 kb on - strand, within PS417_01675 at 369.865 kb on - strand, within PS417_01675 at 369.875 kb on - strand, within PS417_01675 at 370.099 kb on + strand, within PS417_01675 at 370.284 kb on + strand, within PS417_01675 at 370.668 kb on - strand at 370.668 kb on - strand at 370.729 kb on + strand at 370.804 kb on + strand at 370.804 kb on + strand at 370.804 kb on + strand at 370.805 kb on - strand at 370.805 kb on - strand at 370.807 kb on + strand at 370.807 kb on + strand at 370.808 kb on - strand at 370.808 kb on - strand at 370.808 kb on - strand at 370.838 kb on - strand at 371.484 kb on - strand, within PS417_01680 at 371.526 kb on + strand at 371.527 kb on - strand, within PS417_01680
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 367,323 + -0.2 367,536 - -1.2 367,582 + PS417_01670 0.13 -0.9 367,652 + PS417_01670 0.29 +0.7 367,652 + PS417_01670 0.29 +1.5 367,653 - PS417_01670 0.29 -0.3 367,653 - PS417_01670 0.29 -0.2 367,653 - PS417_01670 0.29 +0.8 367,671 - PS417_01670 0.33 -0.5 367,817 + PS417_01670 0.67 +0.3 367,818 - PS417_01670 0.67 -3.2 367,818 - PS417_01670 0.67 +1.2 367,892 + PS417_01670 0.84 -0.4 367,892 + PS417_01670 0.84 -0.7 367,893 - PS417_01670 0.84 -0.8 367,904 - PS417_01670 0.87 +0.0 368,062 - +0.8 368,104 + +0.3 368,105 - +0.8 368,138 + -1.7 368,158 - +0.8 368,164 + -0.3 368,165 - +2.2 368,177 + +0.7 368,178 - -0.4 368,178 - +0.1 368,178 - -1.0 368,268 + -1.7 368,268 + -0.8 368,386 + -1.2 368,410 + -1.1 368,411 - -1.4 368,450 - PS417_01675 0.10 -0.5 368,854 + PS417_01675 0.27 -0.3 369,067 + PS417_01675 0.35 -0.4 369,068 - PS417_01675 0.35 -1.8 369,364 + PS417_01675 0.47 -0.1 369,365 - PS417_01675 0.48 -0.1 369,365 - PS417_01675 0.48 -0.2 369,426 - PS417_01675 0.50 +0.3 369,612 + PS417_01675 0.58 +0.1 369,613 - PS417_01675 0.58 -0.4 369,632 - PS417_01675 0.58 -0.5 369,865 - PS417_01675 0.68 -2.0 369,875 - PS417_01675 0.68 -0.5 370,099 + PS417_01675 0.77 -2.1 370,284 + PS417_01675 0.85 +0.4 370,668 - +1.5 370,668 - -0.7 370,729 + +0.3 370,804 + +0.1 370,804 + +0.7 370,804 + -0.2 370,805 - -1.8 370,805 - +0.3 370,807 + +0.3 370,807 + -0.7 370,808 - -1.4 370,808 - -1.7 370,808 - +0.6 370,838 - -0.3 371,484 - PS417_01680 0.21 +0.6 371,526 + +1.6 371,527 - PS417_01680 0.22 +1.0
Or see this region's nucleotide sequence