Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3751 and Atu3752 are separated by 102 nucleotides Atu3752 and Atu3753 are separated by 233 nucleotides Atu3753 and Atu3754 are separated by 14 nucleotides Atu3754 and Atu3755 are separated by 11 nucleotides
Atu3751: Atu3751 - hypothetical protein, at 834,902 to 835,666
Atu3751
Atu3752: Atu3752 - hypothetical protein, at 835,769 to 835,945
Atu3752
Atu3753: Atu3753 - hypothetical protein, at 836,179 to 836,382
Atu3753
Atu3754: Atu3754 - phosphoribosylaminoimidazole carboxylase catalytic subunit, at 836,397 to 836,897
Atu3754
Atu3755: Atu3755 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 836,909 to 837,985
Atu3755
Position (kb) 836
837 Strain fitness (log2 ratio) -2
-1
0
1 at 835.422 kb on - strand, within Atu3751 at 835.466 kb on - strand, within Atu3751 at 835.500 kb on + strand, within Atu3751 at 835.515 kb on - strand, within Atu3751 at 835.542 kb on + strand, within Atu3751 at 835.560 kb on + strand, within Atu3751 at 835.568 kb on - strand, within Atu3751 at 835.622 kb on - strand at 835.695 kb on + strand at 835.703 kb on - strand at 835.786 kb on + strand at 836.009 kb on - strand at 836.015 kb on + strand at 836.063 kb on - strand at 836.079 kb on + strand at 836.089 kb on - strand at 836.097 kb on - strand at 836.147 kb on - strand at 836.462 kb on - strand, within Atu3754 at 836.672 kb on + strand, within Atu3754 at 836.696 kb on - strand, within Atu3754 at 836.882 kb on + strand at 836.887 kb on + strand at 836.913 kb on - strand at 837.043 kb on + strand, within Atu3755 at 837.051 kb on - strand, within Atu3755 at 837.051 kb on - strand, within Atu3755 at 837.300 kb on - strand, within Atu3755 at 837.408 kb on - strand, within Atu3755 at 837.516 kb on + strand, within Atu3755 at 837.524 kb on - strand, within Atu3755 at 837.569 kb on - strand, within Atu3755 at 837.598 kb on + strand, within Atu3755 at 837.617 kb on + strand, within Atu3755
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 835,422 - Atu3751 0.68 +0.5 835,466 - Atu3751 0.74 -0.3 835,500 + Atu3751 0.78 -0.5 835,515 - Atu3751 0.80 -0.6 835,542 + Atu3751 0.84 -0.1 835,560 + Atu3751 0.86 -0.6 835,568 - Atu3751 0.87 +0.0 835,622 - +0.4 835,695 + -0.2 835,703 - +0.0 835,786 + -0.0 836,009 - +0.4 836,015 + +0.2 836,063 - +0.5 836,079 + -0.8 836,089 - +0.2 836,097 - -0.1 836,147 - +0.1 836,462 - Atu3754 0.13 -0.9 836,672 + Atu3754 0.55 -0.6 836,696 - Atu3754 0.60 -0.4 836,882 + +0.1 836,887 + +0.2 836,913 - +0.5 837,043 + Atu3755 0.12 -0.6 837,051 - Atu3755 0.13 +0.4 837,051 - Atu3755 0.13 -0.7 837,300 - Atu3755 0.36 -1.5 837,408 - Atu3755 0.46 +0.4 837,516 + Atu3755 0.56 +1.0 837,524 - Atu3755 0.57 +0.3 837,569 - Atu3755 0.61 -2.4 837,598 + Atu3755 0.64 -0.4 837,617 + Atu3755 0.66 -0.3
Or see this region's nucleotide sequence