Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20935

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,685,633	+				+0.6
4,685,633	+				+0.6
4,685,634	-				-0.0
4,685,640	+				+8.7
4,685,640	+				-0.3
4,685,641	-				-1.1
4,685,647	+				-0.5
4,685,653	+				+0.3
4,685,654	-				-3.3
4,685,657	+				-3.3
4,685,658	-				-1.1
4,685,720	-		HER17_RS20925	0.21	-0.1
4,685,720	-		HER17_RS20925	0.21	+2.5
4,685,720	-		HER17_RS20925	0.21	-0.1
4,685,720	-		HER17_RS20925	0.21	-1.5
4,685,723	-		HER17_RS20925	0.23	-1.2
4,685,723	-		HER17_RS20925	0.23	-2.0
4,685,723	-		HER17_RS20925	0.23	-1.3
4,685,723	-		HER17_RS20925	0.23	-1.7
4,685,757	-		HER17_RS20925	0.38	-0.7
4,685,850	-		HER17_RS20925	0.80	-0.9
4,685,959	-		HER17_RS20930	0.17	+0.3
4,685,995	+		HER17_RS20930	0.27	-0.1
4,685,995	+		HER17_RS20930	0.27	+0.1
4,686,016	+		HER17_RS20930	0.32	-1.4
4,686,017	-		HER17_RS20930	0.32	+0.6
4,686,024	-		HER17_RS20930	0.34	+0.4
4,686,094	+		HER17_RS20930	0.52	-0.4
4,686,095	-		HER17_RS20930	0.52	-0.2
4,686,095	-		HER17_RS20930	0.52	+0.5
4,686,107	-		HER17_RS20930	0.55	+1.9
4,686,107	-		HER17_RS20930	0.55	+1.0
4,686,142	-		HER17_RS20930	0.64	-0.1
4,686,144	-		HER17_RS20930	0.65	+0.9
4,686,148	+		HER17_RS20930	0.66	-1.5
4,686,235	-		HER17_RS20930	0.88	-0.9
4,686,274	+				+2.5
4,686,274	+				+0.4
4,686,300	+				-0.3
4,686,331	-				+0.2
4,686,352	-				-0.2
4,686,383	+				+0.1
4,686,452	+				-0.4
4,686,480	+				-0.5
4,686,481	-				+0.1
4,686,483	+				-1.2
4,686,484	-				-0.1
4,686,484	-				-0.2
4,686,497	+				+0.3
4,686,497	+				-1.1
4,686,541	+				+1.9
4,686,541	+				-0.9
4,686,542	-				-1.3
4,686,543	+				+0.9
4,686,543	+				-0.1
4,686,543	+				+1.2
4,686,543	+				-0.2
4,686,543	+				-0.4
4,686,543	+				-0.1
4,686,543	+				-0.5
4,686,543	+				+0.1
4,686,543	+				+0.3
4,686,544	-				+1.2
4,686,544	-				-1.6
4,686,544	-				-1.6
4,686,549	+				-0.8
4,686,549	+				-0.2
4,686,549	+				+0.9
4,686,549	+				-0.5
4,686,549	+				+0.4
4,686,550	-				-0.7
4,686,550	-				-1.4
4,686,550	-				+0.1
4,686,550	-				-1.2
4,686,550	-				-0.1
4,686,550	-				+0.9
4,686,550	-				-0.1
4,686,550	-				-0.3
4,686,560	-				+1.1
4,686,560	-				-0.6
4,686,561	+				+0.3
4,686,567	-				+1.5
4,686,602	+				+1.4
4,686,602	+				+1.1
4,686,602	+				+0.9
4,686,605	+				-1.3
4,686,605	+				-1.1
4,686,606	-				-0.3
4,686,611	+				+0.5
4,686,612	-				-0.1
4,686,617	+				-0.1
4,686,645	-				-2.0
4,686,655	+				+2.9
4,686,710	-		HER17_RS20935	0.11	-0.4
4,686,710	-		HER17_RS20935	0.11	-0.4
4,686,723	+		HER17_RS20935	0.13	-1.2
4,686,726	+		HER17_RS20935	0.13	-1.7
4,686,765	+		HER17_RS20935	0.18	+0.7
4,686,766	-		HER17_RS20935	0.18	+0.3
4,686,766	-		HER17_RS20935	0.18	-0.1
4,686,766	-		HER17_RS20935	0.18	-1.2
4,686,766	-		HER17_RS20935	0.18	-0.7
4,686,826	-		HER17_RS20935	0.26	-0.7
4,686,834	+		HER17_RS20935	0.27	+0.3
4,686,834	+		HER17_RS20935	0.27	+2.5
4,686,834	+		HER17_RS20935	0.27	-0.2
4,686,835	-		HER17_RS20935	0.27	-0.7
4,686,835	-		HER17_RS20935	0.27	-0.3
4,686,835	-		HER17_RS20935	0.27	+0.2
4,686,843	+		HER17_RS20935	0.28	-0.8
4,686,843	+		HER17_RS20935	0.28	-0.5
4,686,843	+		HER17_RS20935	0.28	-2.1
4,686,844	-		HER17_RS20935	0.28	+0.0
4,686,844	-		HER17_RS20935	0.28	-1.1
4,686,844	-		HER17_RS20935	0.28	-0.4
4,686,844	-		HER17_RS20935	0.28	-0.3
4,686,938	-		HER17_RS20935	0.40	-0.8
4,686,974	+		HER17_RS20935	0.44	+1.6
4,686,979	+		HER17_RS20935	0.45	+0.2
4,686,997	-		HER17_RS20935	0.47	-0.9
4,687,125	-		HER17_RS20935	0.63	-0.8
4,687,163	-		HER17_RS20935	0.68	+0.6
4,687,240	+		HER17_RS20935	0.78	+0.7
4,687,260	+		HER17_RS20935	0.80	+0.5
4,687,261	-		HER17_RS20935	0.80	-0.3
4,687,261	-		HER17_RS20935	0.80	+0.1
4,687,344	+				-1.1
4,687,385	-				-1.5
4,687,400	-				-1.4
4,687,404	+				-0.0
4,687,404	+				+0.1
4,687,404	+				+1.1
4,687,404	+				+3.2
4,687,404	+				-0.4
4,687,405	-				+2.1
4,687,405	-				-0.7
4,687,408	+				+0.6
4,687,408	+				-0.7
4,687,409	-				-0.1
4,687,432	+				-0.2
4,687,432	+				+0.6
4,687,433	-				-1.7
4,687,433	-				+1.0
4,687,461	+				+0.6
4,687,487	-				+0.6
4,687,487	-				-0.2
4,687,497	+				+1.0
4,687,505	-				+0.5
4,687,505	-				-0.3
4,687,505	-				+0.2
4,687,516	-				+1.7
4,687,528	+				+0.3
4,687,528	+				+1.5
4,687,532	-				-0.1
4,687,588	-				+1.3
4,687,590	+				-0.9
4,687,591	-				+0.2
4,687,591	-				-0.2
4,687,591	-				+0.9
4,687,591	-				-0.1
4,687,734	-				-0.7
4,687,764	+		HER17_RS20940	0.12	+0.3
4,687,764	+		HER17_RS20940	0.12	+0.5
4,687,768	+		HER17_RS20940	0.13	-0.1
4,687,768	+		HER17_RS20940	0.13	-1.0
4,687,769	-		HER17_RS20940	0.13	+0.9
4,687,769	-		HER17_RS20940	0.13	-1.2
4,687,786	+		HER17_RS20940	0.16	-0.7
4,687,796	-		HER17_RS20940	0.18	+0.1
4,687,796	-		HER17_RS20940	0.18	-0.3
4,687,796	-		HER17_RS20940	0.18	+0.8
4,687,796	-		HER17_RS20940	0.18	-2.4
4,687,803	+		HER17_RS20940	0.19	+2.5
4,687,803	+		HER17_RS20940	0.19	+0.9
4,687,803	+		HER17_RS20940	0.19	+1.3
4,687,803	+		HER17_RS20940	0.19	-1.2
4,687,825	+		HER17_RS20940	0.23	+0.8
4,687,854	-		HER17_RS20940	0.28	-2.2
4,687,925	-		HER17_RS20940	0.41	-0.7
4,688,019	+		HER17_RS20940	0.58	+0.0
4,688,036	+		HER17_RS20940	0.61	+0.8
4,688,071	+		HER17_RS20940	0.67	+1.2
4,688,072	-		HER17_RS20940	0.67	+0.9
4,688,072	-		HER17_RS20940	0.67	+0.9
4,688,072	-		HER17_RS20940	0.67	-2.0
4,688,102	-		HER17_RS20940	0.73	-0.4
4,688,109	+		HER17_RS20940	0.74	+0.5
4,688,109	+		HER17_RS20940	0.74	+1.9
4,688,110	-		HER17_RS20940	0.74	-1.4
4,688,140	-		HER17_RS20940	0.80	-0.3
4,688,164	+		HER17_RS20940	0.84	+0.7
4,688,218	+				-2.4
4,688,218	+				+0.7
4,688,374	+		HER17_RS20945	0.13	-0.2
4,688,378	-		HER17_RS20945	0.14	-1.4