Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19035

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
4,285,948	-		HER17_RS19030	0.53	-1.0
4,285,948	-		HER17_RS19030	0.53	-0.5
4,285,966	+		HER17_RS19030	0.54	+0.7
4,286,032	+		HER17_RS19030	0.57	-0.7
4,286,032	+		HER17_RS19030	0.57	-0.1
4,286,033	-		HER17_RS19030	0.57	-0.5
4,286,059	+		HER17_RS19030	0.58	-0.2
4,286,087	-		HER17_RS19030	0.60	-0.1
4,286,128	-		HER17_RS19030	0.62	-0.6
4,286,163	+		HER17_RS19030	0.64	-0.7
4,286,164	-		HER17_RS19030	0.64	-0.2
4,286,164	-		HER17_RS19030	0.64	-0.7
4,286,164	-		HER17_RS19030	0.64	+1.3
4,286,165	+		HER17_RS19030	0.64	-1.1
4,286,166	-		HER17_RS19030	0.64	-0.0
4,286,171	-		HER17_RS19030	0.64	-0.3
4,286,223	-		HER17_RS19030	0.67	-2.1
4,286,223	-		HER17_RS19030	0.67	-0.1
4,286,227	+		HER17_RS19030	0.67	-0.1
4,286,228	-		HER17_RS19030	0.67	+1.1
4,286,228	-		HER17_RS19030	0.67	+0.5
4,286,270	-		HER17_RS19030	0.69	-0.3
4,286,323	-		HER17_RS19030	0.72	+0.4
4,286,323	-		HER17_RS19030	0.72	-0.6
4,286,340	+		HER17_RS19030	0.72	-0.7
4,286,374	+		HER17_RS19030	0.74	+0.3
4,286,379	-		HER17_RS19030	0.74	-0.2
4,286,381	+		HER17_RS19030	0.75	-1.0
4,286,382	-		HER17_RS19030	0.75	-0.2
4,286,382	-		HER17_RS19030	0.75	-1.3
4,286,432	+		HER17_RS19030	0.77	+2.1
4,286,432	+		HER17_RS19030	0.77	-0.9
4,286,450	+		HER17_RS19030	0.78	+1.6
4,286,450	+		HER17_RS19030	0.78	-2.1
4,286,450	+		HER17_RS19030	0.78	+0.3
4,286,451	-		HER17_RS19030	0.78	+0.0
4,286,451	-		HER17_RS19030	0.78	+0.4
4,286,454	+		HER17_RS19030	0.78	-0.1
4,286,454	+		HER17_RS19030	0.78	-0.7
4,286,455	-		HER17_RS19030	0.78	+0.2
4,286,455	-		HER17_RS19030	0.78	+0.9
4,286,455	-		HER17_RS19030	0.78	-0.1
4,286,455	-		HER17_RS19030	0.78	-1.4
4,286,457	+		HER17_RS19030	0.78	+0.3
4,286,457	+		HER17_RS19030	0.78	-0.1
4,286,458	-		HER17_RS19030	0.78	+1.8
4,286,458	-		HER17_RS19030	0.78	-1.4
4,286,477	+		HER17_RS19030	0.79	+0.6
4,286,477	+		HER17_RS19030	0.79	-0.5
4,286,478	-		HER17_RS19030	0.79	+0.5
4,286,652	+		HER17_RS19030	0.88	-0.1
4,286,652	+		HER17_RS19030	0.88	-0.8
4,286,652	+		HER17_RS19030	0.88	+0.6
4,286,652	+		HER17_RS19030	0.88	+0.9
4,286,652	+		HER17_RS19030	0.88	+1.3
4,286,652	+		HER17_RS19030	0.88	+1.3
4,286,652	+		HER17_RS19030	0.88	-1.4
4,286,653	-		HER17_RS19030	0.88	-0.0
4,286,653	-		HER17_RS19030	0.88	+0.3
4,286,653	-		HER17_RS19030	0.88	-0.1
4,286,653	-		HER17_RS19030	0.88	-0.1
4,286,661	+		HER17_RS19030	0.89	-2.1
4,286,661	+		HER17_RS19030	0.89	-0.4
4,286,661	+		HER17_RS19030	0.89	-0.1
4,286,661	+		HER17_RS19030	0.89	-0.1
4,286,661	+		HER17_RS19030	0.89	+0.9
4,286,662	-		HER17_RS19030	0.89	+1.6
4,286,662	-		HER17_RS19030	0.89	+0.5
4,286,667	+		HER17_RS19030	0.89	+0.9
4,286,667	+		HER17_RS19030	0.89	+0.3
4,286,668	-		HER17_RS19030	0.89	-0.1
4,286,668	-		HER17_RS19030	0.89	+0.1
4,286,682	+		HER17_RS19030	0.90	+0.3
4,286,682	+		HER17_RS19030	0.90	+0.9
4,286,683	-		HER17_RS19030	0.90	-0.8
4,286,683	-		HER17_RS19030	0.90	+1.1
4,286,683	-		HER17_RS19030	0.90	-2.8
4,286,705	+				-2.1
4,286,706	-				-0.4
4,286,745	+				-0.2
4,286,745	+				-1.4
4,286,746	-				-1.4
4,286,746	-				-0.1
4,286,746	-				-1.5
4,286,748	-				-1.9
4,286,748	-				+0.4
4,286,748	-				-0.2
4,286,811	+				+0.3
4,286,811	+				-1.9
4,286,811	+				+0.2
4,286,811	+				-1.4
4,286,811	+				-1.2
4,286,811	+				-0.1
4,286,811	+				-0.5
4,286,812	-				-1.9
4,286,812	-				+1.9
4,286,812	-				-0.8
4,286,812	-				-1.3
4,286,812	-				-0.4
4,286,813	+				-0.4
4,286,813	+				-1.9
4,286,814	-				+0.3
4,286,832	+				-1.6
4,286,832	+				-0.5
4,286,832	+				+0.2
4,286,832	+				-0.1
4,286,833	-				-1.1
4,286,833	-				-1.0
4,286,849	+				+0.9
4,286,849	+				-1.7
4,286,856	+				+0.1
4,286,856	+				-0.8
4,286,872	-				-0.3
4,286,873	+				-0.4
4,286,873	+				-0.1
4,286,873	+				-0.8
4,286,874	-				-0.3
4,286,874	-				-0.7
4,286,889	+				+2.0
4,286,889	+				-0.8
4,286,890	-				-0.3
4,286,890	-				+0.6
4,286,986	-				+1.0
4,287,168	+		HER17_RS19035	0.33	+0.3
4,287,168	+		HER17_RS19035	0.33	-1.4
4,287,168	+		HER17_RS19035	0.33	-0.8
4,287,168	+		HER17_RS19035	0.33	-0.1
4,287,169	-		HER17_RS19035	0.33	+0.5
4,287,256	-		HER17_RS19035	0.45	+0.1
4,287,256	-		HER17_RS19035	0.45	-1.0
4,287,301	+		HER17_RS19035	0.51	+0.2
4,287,301	+		HER17_RS19035	0.51	-2.4
4,287,302	-		HER17_RS19035	0.52	-0.1
4,287,320	-		HER17_RS19035	0.54	+0.2
4,287,320	-		HER17_RS19035	0.54	-0.1
4,287,320	-		HER17_RS19035	0.54	-0.3
4,287,333	+		HER17_RS19035	0.56	-0.1
4,287,334	-		HER17_RS19035	0.56	-0.7
4,287,354	+		HER17_RS19035	0.59	+0.5
4,287,355	-		HER17_RS19035	0.59	-0.3
4,287,539	+		HER17_RS19035	0.85	-0.7
4,287,570	+		HER17_RS19035	0.89	+0.1
4,287,573	+		HER17_RS19035	0.89	-0.8
4,287,573	+		HER17_RS19035	0.89	+0.9
4,287,574	-		HER17_RS19035	0.90	-1.3
4,287,574	-		HER17_RS19035	0.90	-2.6
4,287,574	-		HER17_RS19035	0.90	-1.1
4,287,633	+				-0.2
4,287,633	+				+0.9
4,287,688	+				+0.5
4,287,689	-				-0.3
4,287,689	-				-0.1
4,287,799	+				-0.3
4,287,799	+				-2.0
4,287,851	+				+0.8
4,287,852	-				-0.4
4,287,852	-				-0.1
4,287,911	+				-0.3
4,287,941	+		HER17_RS19040	0.11	-0.1
4,287,954	-		HER17_RS19040	0.12	+0.6
4,287,992	+		HER17_RS19040	0.15	-1.1
4,287,993	-		HER17_RS19040	0.15	-0.1
4,288,066	+		HER17_RS19040	0.21	-0.4
4,288,067	-		HER17_RS19040	0.21	+0.3
4,288,344	-		HER17_RS19040	0.43	+1.9
4,288,434	+		HER17_RS19040	0.50	-0.9
4,288,434	+		HER17_RS19040	0.50	-0.6
4,288,435	-		HER17_RS19040	0.50	+1.3
4,288,474	+		HER17_RS19040	0.53	+0.5
4,288,474	+		HER17_RS19040	0.53	+1.5
4,288,583	+		HER17_RS19040	0.61	-1.4
4,288,584	-		HER17_RS19040	0.62	+0.5
4,288,585	+		HER17_RS19040	0.62	+0.2
4,288,585	+		HER17_RS19040	0.62	+0.9
4,288,585	+		HER17_RS19040	0.62	-0.4
4,288,628	+		HER17_RS19040	0.65	-1.1
4,288,629	-		HER17_RS19040	0.65	+1.2
4,288,629	-		HER17_RS19040	0.65	-0.7