Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17085

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,845,259	-		HER17_RS17075	0.70	-0.2
3,845,259	-		HER17_RS17075	0.70	-1.2
3,845,276	-		HER17_RS17075	0.71	+0.2
3,845,310	-		HER17_RS17075	0.73	+1.0
3,845,398	+		HER17_RS17075	0.80	+0.2
3,845,399	-		HER17_RS17075	0.80	+1.0
3,845,400	+		HER17_RS17075	0.80	+0.8
3,845,400	+		HER17_RS17075	0.80	-0.2
3,845,400	+		HER17_RS17075	0.80	+0.1
3,845,401	-		HER17_RS17075	0.80	-0.5
3,845,401	-		HER17_RS17075	0.80	+0.5
3,845,401	-		HER17_RS17075	0.80	-0.8
3,845,427	-		HER17_RS17075	0.82	-0.8
3,845,439	-		HER17_RS17075	0.83	-0.8
3,845,449	-		HER17_RS17075	0.84	+1.5
3,845,449	-		HER17_RS17075	0.84	+0.7
3,845,470	+		HER17_RS17075	0.85	+2.8
3,845,470	+		HER17_RS17075	0.85	-0.0
3,845,471	-		HER17_RS17075	0.85	+1.0
3,845,505	-		HER17_RS17075	0.88	+0.4
3,845,527	+		HER17_RS17075	0.89	-0.8
3,845,527	+		HER17_RS17075	0.89	-0.8
3,845,527	+		HER17_RS17075	0.89	+0.7
3,845,528	-		HER17_RS17075	0.89	+1.4
3,845,623	+				-0.8
3,845,679	+				-0.1
3,845,680	-				-0.7
3,845,680	-				+0.5
3,845,692	+				+0.4
3,845,693	-				-0.9
3,845,693	-				-0.5
3,845,711	-				+0.2
3,845,726	-				-0.9
3,845,734	+				-0.0
3,845,735	-				+0.4
3,845,735	-				+1.0
3,845,832	-		HER17_RS17080	0.26	-0.2
3,845,961	+		HER17_RS17080	0.63	+0.1
3,845,961	+		HER17_RS17080	0.63	-1.5
3,845,961	+		HER17_RS17080	0.63	+0.7
3,845,997	+		HER17_RS17080	0.74	+0.8
3,845,997	+		HER17_RS17080	0.74	+1.0
3,845,997	+		HER17_RS17080	0.74	+0.2
3,845,997	+		HER17_RS17080	0.74	-1.4
3,845,997	+		HER17_RS17080	0.74	+0.4
3,845,997	+		HER17_RS17080	0.74	+0.2
3,845,997	+		HER17_RS17080	0.74	-0.8
3,845,997	+		HER17_RS17080	0.74	-0.1
3,845,998	-		HER17_RS17080	0.74	-0.2
3,845,998	-		HER17_RS17080	0.74	+0.8
3,845,998	-		HER17_RS17080	0.74	-0.7
3,845,998	-		HER17_RS17080	0.74	-0.5
3,845,998	-		HER17_RS17080	0.74	+0.2
3,845,998	-		HER17_RS17080	0.74	+1.1
3,845,998	-		HER17_RS17080	0.74	-0.1
3,846,087	-				-0.1
3,846,090	-				+1.1
3,846,099	+				-0.3
3,846,099	+				-0.9
3,846,100	-				+1.4
3,846,100	-				-0.4
3,846,100	-				+0.4
3,846,108	+				+0.3
3,846,108	+				+3.3
3,846,108	+				+0.4
3,846,108	+				-1.0
3,846,109	-				-1.1
3,846,111	+				+0.6
3,846,111	+				+0.3
3,846,247	-				+0.4
3,846,336	-		HER17_RS17085	0.13	-0.8
3,846,336	-		HER17_RS17085	0.13	+0.8
3,846,336	-		HER17_RS17085	0.13	-0.2
3,846,433	-		HER17_RS17085	0.20	-0.8
3,846,449	-		HER17_RS17085	0.21	+1.2
3,846,449	-		HER17_RS17085	0.21	-0.2
3,846,548	-		HER17_RS17085	0.27	+2.8
3,846,548	-		HER17_RS17085	0.27	+0.2
3,846,646	-		HER17_RS17085	0.34	+0.6
3,846,735	+		HER17_RS17085	0.40	-0.8
3,846,735	+		HER17_RS17085	0.40	-0.5
3,846,736	-		HER17_RS17085	0.40	-0.1
3,846,824	-		HER17_RS17085	0.45	+0.5
3,846,847	-		HER17_RS17085	0.47	-0.3
3,846,851	+		HER17_RS17085	0.47	-2.4
3,846,851	+		HER17_RS17085	0.47	-1.8
3,846,851	+		HER17_RS17085	0.47	-0.5
3,846,855	+		HER17_RS17085	0.47	-2.0
3,846,855	+		HER17_RS17085	0.47	+0.4
3,846,855	+		HER17_RS17085	0.47	-0.2
3,846,856	-		HER17_RS17085	0.47	+1.8
3,847,000	+		HER17_RS17085	0.57	-1.1
3,847,000	+		HER17_RS17085	0.57	-0.8
3,847,001	-		HER17_RS17085	0.57	+0.7
3,847,001	-		HER17_RS17085	0.57	-0.3
3,847,001	-		HER17_RS17085	0.57	-0.5
3,847,103	-		HER17_RS17085	0.64	-1.1
3,847,103	-		HER17_RS17085	0.64	-2.0
3,847,135	+		HER17_RS17085	0.66	-0.8
3,847,135	+		HER17_RS17085	0.66	-0.4
3,847,135	+		HER17_RS17085	0.66	-0.2
3,847,136	-		HER17_RS17085	0.66	-0.1
3,847,136	-		HER17_RS17085	0.66	+1.4
3,847,215	+		HER17_RS17085	0.71	-2.0
3,847,216	-		HER17_RS17085	0.71	-2.5
3,847,315	-		HER17_RS17085	0.77	+0.4
3,847,381	+		HER17_RS17085	0.82	-0.1
3,847,382	-		HER17_RS17085	0.82	+0.9
3,847,411	+		HER17_RS17085	0.84	-0.1
3,847,412	-		HER17_RS17085	0.84	-1.0
3,847,484	+		HER17_RS17085	0.88	-0.9
3,847,484	+		HER17_RS17085	0.88	+1.1
3,847,485	-		HER17_RS17085	0.89	-0.2
3,847,488	+		HER17_RS17085	0.89	+0.3
3,847,488	+		HER17_RS17085	0.89	-0.3
3,847,489	-		HER17_RS17085	0.89	+0.1
3,847,489	-		HER17_RS17085	0.89	-0.8
3,847,489	-		HER17_RS17085	0.89	+0.9
3,847,515	-				+1.3
3,847,516	+				-1.8
3,847,516	+				-0.8
3,847,516	+				-0.0
3,847,516	+				-0.3
3,847,516	+				+0.8
3,847,516	+				+0.3
3,847,517	-				+1.0
3,847,517	-				-2.8
3,847,517	-				-1.4
3,847,517	-				+0.6
3,847,547	-				-0.5
3,847,547	-				-0.3
3,847,547	-				-1.5
3,847,547	-				-0.9
3,847,547	-				-1.4
3,847,558	+				-2.4
3,847,558	+				-0.2
3,847,559	-				-1.2
3,847,559	-				+0.0
3,847,559	-				+1.4
3,847,559	-				-0.6
3,847,559	-				-0.2
3,847,559	-				-0.2
3,847,559	-				-0.7
3,847,559	-				-0.2
3,847,636	+				-1.2
3,847,636	+				-1.6
3,847,636	+				+0.0
3,847,636	+				-0.8
3,847,636	+				-0.5
3,847,636	+				+1.0
3,847,639	-				+2.7
3,847,657	+				+0.4
3,847,683	+				+0.6
3,847,683	+				-0.4
3,847,683	+				+1.4
3,847,683	+				-0.2
3,847,683	+				-1.2
3,847,684	-				-1.0
3,847,684	-				-0.7
3,847,684	-				-1.2
3,847,693	+				-1.3
3,847,693	+				+1.5
3,847,693	+				+0.3
3,847,693	+				-0.1
3,847,694	-				-0.8
3,848,107	+		HER17_RS17090	0.60	-1.3
3,848,108	-		HER17_RS17090	0.60	-0.4
3,848,127	-		HER17_RS17090	0.63	+0.2
3,848,215	-		HER17_RS17090	0.77	+1.3
3,848,215	-		HER17_RS17090	0.77	+0.2
3,848,354	-				+0.4
3,848,398	+				-0.9
3,848,438	+				-2.0
3,848,438	+				+3.0
3,848,443	-				-0.5
3,848,590	+		HER17_RS17095	0.18	-0.9
3,848,590	+		HER17_RS17095	0.18	+0.0