Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15490

Experiment: Tuber-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS15485 and HER17_RS15490 are separated by 267 nucleotidesHER17_RS15490 and HER17_RS15495 overlap by 4 nucleotidesHER17_RS15495 and HER17_RS15500 overlap by 75 nucleotides HER17_RS15485: HER17_RS15485 - spermidine N1-acetyltransferase, at 3,471,839 to 3,472,414 _RS15485 HER17_RS15490: HER17_RS15490 - ABC transporter permease, at 3,472,682 to 3,475,111 _RS15490 HER17_RS15495: HER17_RS15495 - ABC transporter ATP-binding protein, at 3,475,108 to 3,475,839 _RS15495 HER17_RS15500: HER17_RS15500 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 3,475,765 to 3,476,445 _RS15500 Position (kb) 3472 3473 3474 3475 3476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3471.713 kb on + strandat 3471.713 kb on + strandat 3471.759 kb on + strandat 3471.761 kb on + strandat 3471.761 kb on + strandat 3471.762 kb on - strandat 3471.762 kb on - strandat 3471.764 kb on + strandat 3471.764 kb on + strandat 3471.764 kb on + strandat 3471.765 kb on - strandat 3471.776 kb on - strandat 3471.816 kb on - strandat 3471.816 kb on - strandat 3471.820 kb on - strandat 3471.827 kb on + strandat 3471.828 kb on - strandat 3471.828 kb on - strandat 3471.838 kb on + strandat 3471.838 kb on + strandat 3471.838 kb on + strandat 3471.838 kb on + strandat 3471.839 kb on - strandat 3471.953 kb on + strand, within HER17_RS15485at 3471.953 kb on + strand, within HER17_RS15485at 3471.984 kb on - strand, within HER17_RS15485at 3471.994 kb on + strand, within HER17_RS15485at 3471.995 kb on - strand, within HER17_RS15485at 3471.995 kb on - strand, within HER17_RS15485at 3471.995 kb on - strand, within HER17_RS15485at 3471.995 kb on - strand, within HER17_RS15485at 3471.995 kb on - strand, within HER17_RS15485at 3472.047 kb on + strand, within HER17_RS15485at 3472.047 kb on + strand, within HER17_RS15485at 3472.048 kb on - strand, within HER17_RS15485at 3472.048 kb on - strand, within HER17_RS15485at 3472.048 kb on - strand, within HER17_RS15485at 3472.048 kb on - strand, within HER17_RS15485at 3472.048 kb on - strand, within HER17_RS15485at 3472.065 kb on + strand, within HER17_RS15485at 3472.072 kb on + strand, within HER17_RS15485at 3472.073 kb on - strand, within HER17_RS15485at 3472.136 kb on + strand, within HER17_RS15485at 3472.170 kb on - strand, within HER17_RS15485at 3472.186 kb on - strand, within HER17_RS15485at 3472.186 kb on - strand, within HER17_RS15485at 3472.193 kb on + strand, within HER17_RS15485at 3472.194 kb on - strand, within HER17_RS15485at 3472.202 kb on + strand, within HER17_RS15485at 3472.203 kb on - strand, within HER17_RS15485at 3472.203 kb on - strand, within HER17_RS15485at 3472.203 kb on - strand, within HER17_RS15485at 3472.244 kb on + strand, within HER17_RS15485at 3472.244 kb on + strand, within HER17_RS15485at 3472.244 kb on + strand, within HER17_RS15485at 3472.245 kb on - strand, within HER17_RS15485at 3472.245 kb on - strand, within HER17_RS15485at 3472.266 kb on + strand, within HER17_RS15485at 3472.266 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.346 kb on + strand, within HER17_RS15485at 3472.347 kb on - strand, within HER17_RS15485at 3472.347 kb on - strand, within HER17_RS15485at 3472.347 kb on - strand, within HER17_RS15485at 3472.347 kb on - strand, within HER17_RS15485at 3472.347 kb on - strand, within HER17_RS15485at 3472.348 kb on + strand, within HER17_RS15485at 3472.348 kb on + strand, within HER17_RS15485at 3472.349 kb on - strand, within HER17_RS15485at 3472.412 kb on + strandat 3472.413 kb on - strandat 3472.417 kb on + strandat 3472.418 kb on - strandat 3472.418 kb on - strandat 3472.474 kb on + strandat 3472.474 kb on + strandat 3472.475 kb on - strandat 3472.475 kb on - strandat 3472.475 kb on - strandat 3472.485 kb on + strandat 3472.486 kb on - strandat 3472.486 kb on - strandat 3472.490 kb on - strandat 3472.490 kb on - strandat 3472.532 kb on - strandat 3472.532 kb on - strandat 3472.532 kb on - strandat 3472.532 kb on - strandat 3472.537 kb on - strandat 3472.604 kb on + strandat 3472.652 kb on + strandat 3472.672 kb on + strandat 3472.674 kb on + strandat 3472.728 kb on - strandat 3472.828 kb on + strandat 3472.926 kb on - strand, within HER17_RS15490at 3472.947 kb on - strand, within HER17_RS15490at 3472.947 kb on - strand, within HER17_RS15490at 3472.957 kb on - strand, within HER17_RS15490at 3472.957 kb on - strand, within HER17_RS15490at 3472.958 kb on + strand, within HER17_RS15490at 3472.958 kb on + strand, within HER17_RS15490at 3472.959 kb on - strand, within HER17_RS15490at 3473.010 kb on - strand, within HER17_RS15490at 3473.047 kb on + strand, within HER17_RS15490at 3473.048 kb on - strand, within HER17_RS15490at 3473.066 kb on + strand, within HER17_RS15490at 3473.067 kb on - strand, within HER17_RS15490at 3473.152 kb on + strand, within HER17_RS15490at 3473.153 kb on - strand, within HER17_RS15490at 3473.153 kb on - strand, within HER17_RS15490at 3473.153 kb on - strand, within HER17_RS15490at 3473.176 kb on - strand, within HER17_RS15490at 3473.233 kb on + strand, within HER17_RS15490at 3473.233 kb on + strand, within HER17_RS15490at 3473.233 kb on + strand, within HER17_RS15490at 3473.329 kb on + strand, within HER17_RS15490at 3473.330 kb on - strand, within HER17_RS15490at 3473.375 kb on - strand, within HER17_RS15490at 3473.414 kb on + strand, within HER17_RS15490at 3473.414 kb on + strand, within HER17_RS15490at 3473.415 kb on - strand, within HER17_RS15490at 3473.624 kb on - strand, within HER17_RS15490at 3473.637 kb on + strand, within HER17_RS15490at 3473.925 kb on - strand, within HER17_RS15490at 3473.968 kb on - strand, within HER17_RS15490at 3473.968 kb on - strand, within HER17_RS15490at 3473.968 kb on - strand, within HER17_RS15490at 3473.970 kb on + strand, within HER17_RS15490at 3473.970 kb on + strand, within HER17_RS15490at 3473.971 kb on - strand, within HER17_RS15490at 3474.215 kb on + strand, within HER17_RS15490at 3474.242 kb on + strand, within HER17_RS15490at 3474.242 kb on + strand, within HER17_RS15490at 3474.300 kb on + strand, within HER17_RS15490at 3474.315 kb on + strand, within HER17_RS15490at 3474.346 kb on + strand, within HER17_RS15490at 3474.442 kb on - strand, within HER17_RS15490at 3474.484 kb on + strand, within HER17_RS15490at 3474.484 kb on + strand, within HER17_RS15490at 3474.523 kb on - strand, within HER17_RS15490at 3474.523 kb on - strand, within HER17_RS15490at 3474.532 kb on + strand, within HER17_RS15490at 3474.533 kb on - strand, within HER17_RS15490at 3474.593 kb on - strand, within HER17_RS15490at 3474.616 kb on + strand, within HER17_RS15490at 3474.616 kb on + strand, within HER17_RS15490at 3474.860 kb on - strand, within HER17_RS15490at 3475.257 kb on + strand, within HER17_RS15495at 3475.376 kb on - strand, within HER17_RS15495at 3475.376 kb on - strand, within HER17_RS15495at 3475.618 kb on + strand, within HER17_RS15495at 3475.618 kb on + strand, within HER17_RS15495at 3475.619 kb on - strand, within HER17_RS15495at 3475.619 kb on - strand, within HER17_RS15495at 3475.619 kb on - strand, within HER17_RS15495at 3475.619 kb on - strand, within HER17_RS15495at 3475.619 kb on - strand, within HER17_RS15495at 3475.755 kb on + strand, within HER17_RS15495at 3475.756 kb on - strand, within HER17_RS15495at 3475.758 kb on + strand, within HER17_RS15495at 3475.759 kb on - strand, within HER17_RS15495at 3475.866 kb on - strand, within HER17_RS15500at 3475.875 kb on - strand, within HER17_RS15500at 3475.898 kb on + strand, within HER17_RS15500at 3475.898 kb on + strand, within HER17_RS15500at 3475.901 kb on + strand, within HER17_RS15500at 3475.901 kb on + strand, within HER17_RS15500at 3475.901 kb on + strand, within HER17_RS15500at 3475.902 kb on - strand, within HER17_RS15500at 3475.902 kb on - strand, within HER17_RS15500at 3475.902 kb on - strand, within HER17_RS15500at 3475.964 kb on + strand, within HER17_RS15500at 3476.022 kb on + strand, within HER17_RS15500at 3476.022 kb on + strand, within HER17_RS15500at 3476.023 kb on - strand, within HER17_RS15500

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Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
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3,471,713 + -0.2
3,471,713 + -1.2
3,471,759 + +0.5
3,471,761 + -1.4
3,471,761 + -0.8
3,471,762 - +1.2
3,471,762 - -0.2
3,471,764 + +0.4
3,471,764 + -1.7
3,471,764 + -0.2
3,471,765 - +2.6
3,471,776 - +0.4
3,471,816 - -0.0
3,471,816 - +0.6
3,471,820 - -0.4
3,471,827 + +1.0
3,471,828 - +0.3
3,471,828 - -1.0
3,471,838 + -0.5
3,471,838 + +0.6
3,471,838 + -0.8
3,471,838 + +0.4
3,471,839 - +0.8
3,471,953 + HER17_RS15485 0.20 -0.4
3,471,953 + HER17_RS15485 0.20 +1.1
3,471,984 - HER17_RS15485 0.25 -1.5
3,471,994 + HER17_RS15485 0.27 -1.3
3,471,995 - HER17_RS15485 0.27 +1.0
3,471,995 - HER17_RS15485 0.27 -1.0
3,471,995 - HER17_RS15485 0.27 -0.1
3,471,995 - HER17_RS15485 0.27 -1.4
3,471,995 - HER17_RS15485 0.27 -2.4
3,472,047 + HER17_RS15485 0.36 -0.4
3,472,047 + HER17_RS15485 0.36 -1.0
3,472,048 - HER17_RS15485 0.36 -0.4
3,472,048 - HER17_RS15485 0.36 -1.4
3,472,048 - HER17_RS15485 0.36 -0.4
3,472,048 - HER17_RS15485 0.36 +0.8
3,472,048 - HER17_RS15485 0.36 +0.1
3,472,065 + HER17_RS15485 0.39 -0.9
3,472,072 + HER17_RS15485 0.40 +0.7
3,472,073 - HER17_RS15485 0.41 +0.3
3,472,136 + HER17_RS15485 0.52 +0.5
3,472,170 - HER17_RS15485 0.57 -0.6
3,472,186 - HER17_RS15485 0.60 +0.8
3,472,186 - HER17_RS15485 0.60 -0.4
3,472,193 + HER17_RS15485 0.61 -2.0
3,472,194 - HER17_RS15485 0.62 -0.3
3,472,202 + HER17_RS15485 0.63 +0.6
3,472,203 - HER17_RS15485 0.63 -1.5
3,472,203 - HER17_RS15485 0.63 +0.6
3,472,203 - HER17_RS15485 0.63 -0.1
3,472,244 + HER17_RS15485 0.70 +1.6
3,472,244 + HER17_RS15485 0.70 +1.4
3,472,244 + HER17_RS15485 0.70 +1.1
3,472,245 - HER17_RS15485 0.70 -2.0
3,472,245 - HER17_RS15485 0.70 -0.2
3,472,266 + HER17_RS15485 0.74 +0.2
3,472,266 + HER17_RS15485 0.74 +0.6
3,472,346 + HER17_RS15485 0.88 +0.5
3,472,346 + HER17_RS15485 0.88 -1.4
3,472,346 + HER17_RS15485 0.88 -0.6
3,472,346 + HER17_RS15485 0.88 +0.2
3,472,346 + HER17_RS15485 0.88 -0.3
3,472,346 + HER17_RS15485 0.88 +0.2
3,472,346 + HER17_RS15485 0.88 +0.5
3,472,346 + HER17_RS15485 0.88 -1.0
3,472,346 + HER17_RS15485 0.88 -0.4
3,472,346 + HER17_RS15485 0.88 -1.0
3,472,346 + HER17_RS15485 0.88 -2.0
3,472,346 + HER17_RS15485 0.88 +0.1
3,472,347 - HER17_RS15485 0.88 -0.1
3,472,347 - HER17_RS15485 0.88 +1.0
3,472,347 - HER17_RS15485 0.88 -0.4
3,472,347 - HER17_RS15485 0.88 -1.0
3,472,347 - HER17_RS15485 0.88 +0.6
3,472,348 + HER17_RS15485 0.88 -1.0
3,472,348 + HER17_RS15485 0.88 +2.0
3,472,349 - HER17_RS15485 0.89 -1.0
3,472,412 + -0.4
3,472,413 - +0.5
3,472,417 + +0.3
3,472,418 - -0.4
3,472,418 - +0.7
3,472,474 + +0.4
3,472,474 + +0.2
3,472,475 - +0.1
3,472,475 - -2.4
3,472,475 - -2.4
3,472,485 + -1.5
3,472,486 - -2.8
3,472,486 - +0.0
3,472,490 - +1.1
3,472,490 - +1.1
3,472,532 - +0.9
3,472,532 - -0.0
3,472,532 - +0.0
3,472,532 - -1.9
3,472,537 - +0.9
3,472,604 + +1.6
3,472,652 + -3.0
3,472,672 + +0.8
3,472,674 + -0.5
3,472,728 - -0.1
3,472,828 + -0.3
3,472,926 - HER17_RS15490 0.10 -0.3
3,472,947 - HER17_RS15490 0.11 +0.1
3,472,947 - HER17_RS15490 0.11 +0.2
3,472,957 - HER17_RS15490 0.11 -0.9
3,472,957 - HER17_RS15490 0.11 -0.4
3,472,958 + HER17_RS15490 0.11 +0.4
3,472,958 + HER17_RS15490 0.11 -0.8
3,472,959 - HER17_RS15490 0.11 +2.2
3,473,010 - HER17_RS15490 0.13 +1.0
3,473,047 + HER17_RS15490 0.15 +0.4
3,473,048 - HER17_RS15490 0.15 +0.7
3,473,066 + HER17_RS15490 0.16 +0.3
3,473,067 - HER17_RS15490 0.16 -1.0
3,473,152 + HER17_RS15490 0.19 +1.0
3,473,153 - HER17_RS15490 0.19 +0.6
3,473,153 - HER17_RS15490 0.19 -0.2
3,473,153 - HER17_RS15490 0.19 +0.3
3,473,176 - HER17_RS15490 0.20 +0.4
3,473,233 + HER17_RS15490 0.23 +0.6
3,473,233 + HER17_RS15490 0.23 -0.4
3,473,233 + HER17_RS15490 0.23 -0.6
3,473,329 + HER17_RS15490 0.27 -1.0
3,473,330 - HER17_RS15490 0.27 -0.6
3,473,375 - HER17_RS15490 0.29 -1.8
3,473,414 + HER17_RS15490 0.30 +0.0
3,473,414 + HER17_RS15490 0.30 -1.4
3,473,415 - HER17_RS15490 0.30 +0.4
3,473,624 - HER17_RS15490 0.39 +0.2
3,473,637 + HER17_RS15490 0.39 +0.8
3,473,925 - HER17_RS15490 0.51 +1.0
3,473,968 - HER17_RS15490 0.53 -0.6
3,473,968 - HER17_RS15490 0.53 -1.0
3,473,968 - HER17_RS15490 0.53 +0.7
3,473,970 + HER17_RS15490 0.53 +0.0
3,473,970 + HER17_RS15490 0.53 -0.6
3,473,971 - HER17_RS15490 0.53 -0.1
3,474,215 + HER17_RS15490 0.63 +0.0
3,474,242 + HER17_RS15490 0.64 -0.2
3,474,242 + HER17_RS15490 0.64 +0.3
3,474,300 + HER17_RS15490 0.67 -0.5
3,474,315 + HER17_RS15490 0.67 -0.3
3,474,346 + HER17_RS15490 0.68 -0.8
3,474,442 - HER17_RS15490 0.72 -0.8
3,474,484 + HER17_RS15490 0.74 +0.1
3,474,484 + HER17_RS15490 0.74 +0.1
3,474,523 - HER17_RS15490 0.76 +0.3
3,474,523 - HER17_RS15490 0.76 +0.8
3,474,532 + HER17_RS15490 0.76 +0.1
3,474,533 - HER17_RS15490 0.76 +0.2
3,474,593 - HER17_RS15490 0.79 +1.6
3,474,616 + HER17_RS15490 0.80 +1.4
3,474,616 + HER17_RS15490 0.80 -0.3
3,474,860 - HER17_RS15490 0.90 -1.8
3,475,257 + HER17_RS15495 0.20 -0.3
3,475,376 - HER17_RS15495 0.37 -1.5
3,475,376 - HER17_RS15495 0.37 -0.7
3,475,618 + HER17_RS15495 0.70 +0.4
3,475,618 + HER17_RS15495 0.70 -0.5
3,475,619 - HER17_RS15495 0.70 +0.5
3,475,619 - HER17_RS15495 0.70 -0.2
3,475,619 - HER17_RS15495 0.70 +0.4
3,475,619 - HER17_RS15495 0.70 +0.6
3,475,619 - HER17_RS15495 0.70 -0.8
3,475,755 + HER17_RS15495 0.88 +0.7
3,475,756 - HER17_RS15495 0.89 -2.0
3,475,758 + HER17_RS15495 0.89 -1.4
3,475,759 - HER17_RS15495 0.89 -0.4
3,475,866 - HER17_RS15500 0.15 -0.9
3,475,875 - HER17_RS15500 0.16 +0.1
3,475,898 + HER17_RS15500 0.20 -0.1
3,475,898 + HER17_RS15500 0.20 +0.4
3,475,901 + HER17_RS15500 0.20 +0.2
3,475,901 + HER17_RS15500 0.20 +0.6
3,475,901 + HER17_RS15500 0.20 -0.5
3,475,902 - HER17_RS15500 0.20 -1.1
3,475,902 - HER17_RS15500 0.20 +0.1
3,475,902 - HER17_RS15500 0.20 -0.2
3,475,964 + HER17_RS15500 0.29 +0.9
3,476,022 + HER17_RS15500 0.38 -0.2
3,476,022 + HER17_RS15500 0.38 -1.0
3,476,023 - HER17_RS15500 0.38 -0.4

Or see this region's nucleotide sequence