Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14795

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,327,521	+		HER17_RS14790	0.34	-1.2
3,327,711	+		HER17_RS14790	0.46	-1.3
3,327,880	+		HER17_RS14790	0.58	-1.0
3,327,881	-		HER17_RS14790	0.58	-2.4
3,327,928	+		HER17_RS14790	0.61	-0.5
3,327,947	-		HER17_RS14790	0.62	+1.2
3,327,956	-		HER17_RS14790	0.63	+0.4
3,327,959	+		HER17_RS14790	0.63	+0.4
3,327,959	+		HER17_RS14790	0.63	-1.4
3,327,959	+		HER17_RS14790	0.63	-1.0
3,327,959	+		HER17_RS14790	0.63	-0.6
3,327,959	+		HER17_RS14790	0.63	-0.5
3,327,960	-		HER17_RS14790	0.63	+0.2
3,327,960	-		HER17_RS14790	0.63	-0.6
3,328,053	+		HER17_RS14790	0.69	-0.1
3,328,053	+		HER17_RS14790	0.69	-0.4
3,328,078	+		HER17_RS14790	0.71	+1.0
3,328,522	+				+0.2
3,328,522	+				-3.1
3,328,522	+				+0.5
3,328,522	+				+0.6
3,328,646	+				+0.0
3,328,646	+				-0.4
3,328,647	-				-0.2
3,328,792	+				-1.0
3,328,792	+				-1.0
3,328,792	+				+0.2
3,328,792	+				+2.2
3,328,793	-				+0.1
3,328,793	-				-1.2
3,328,793	-				+2.5
3,328,793	-				+0.1
3,328,796	+				+0.0
3,328,796	+				+1.5
3,328,796	+				-0.6
3,328,797	-				-0.4
3,328,823	-				-1.7
3,328,823	-				-0.8
3,328,849	+		HER17_RS14795	0.11	+0.4
3,328,850	-		HER17_RS14795	0.11	+1.6
3,328,850	-		HER17_RS14795	0.11	-0.4
3,328,963	+		HER17_RS14795	0.14	-2.9
3,328,964	-		HER17_RS14795	0.14	-0.6
3,329,009	-		HER17_RS14795	0.16	+0.7
3,329,034	-		HER17_RS14795	0.17	-1.0
3,329,071	+		HER17_RS14795	0.18	+0.6
3,329,197	+		HER17_RS14795	0.22	-0.4
3,329,197	+		HER17_RS14795	0.22	-1.4
3,329,198	-		HER17_RS14795	0.22	+0.2
3,329,198	-		HER17_RS14795	0.22	-1.0
3,329,219	-		HER17_RS14795	0.22	-0.4
3,329,253	-		HER17_RS14795	0.24	-0.4
3,329,256	+		HER17_RS14795	0.24	-0.8
3,329,256	+		HER17_RS14795	0.24	-0.5
3,329,257	-		HER17_RS14795	0.24	+1.7
3,329,257	-		HER17_RS14795	0.24	-1.2
3,329,257	-		HER17_RS14795	0.24	-1.1
3,329,483	-		HER17_RS14795	0.31	+0.6
3,329,643	+		HER17_RS14795	0.36	+0.4
3,329,643	+		HER17_RS14795	0.36	+0.6
3,329,644	-		HER17_RS14795	0.36	+0.7
3,329,644	-		HER17_RS14795	0.36	-0.1
3,329,644	-		HER17_RS14795	0.36	+1.1
3,329,644	-		HER17_RS14795	0.36	-0.1
3,329,644	-		HER17_RS14795	0.36	+0.2
3,329,644	-		HER17_RS14795	0.36	+0.2
3,329,646	+		HER17_RS14795	0.36	+0.3
3,329,656	+		HER17_RS14795	0.36	-1.4
3,329,720	+		HER17_RS14795	0.38	+0.6
3,329,720	+		HER17_RS14795	0.38	-0.4
3,329,720	+		HER17_RS14795	0.38	-1.4
3,329,721	-		HER17_RS14795	0.38	+0.8
3,329,721	-		HER17_RS14795	0.38	+0.2
3,329,735	+		HER17_RS14795	0.39	-0.7
3,329,735	+		HER17_RS14795	0.39	-1.2
3,329,735	+		HER17_RS14795	0.39	-0.1
3,329,735	+		HER17_RS14795	0.39	-0.4
3,329,736	-		HER17_RS14795	0.39	+1.6
3,329,736	-		HER17_RS14795	0.39	-2.0
3,329,736	-		HER17_RS14795	0.39	+1.6
3,329,736	-		HER17_RS14795	0.39	+0.8
3,329,743	+		HER17_RS14795	0.39	-1.4
3,329,754	+		HER17_RS14795	0.40	-0.8
3,329,754	+		HER17_RS14795	0.40	+2.9
3,329,846	+		HER17_RS14795	0.42	+1.6
3,329,959	+		HER17_RS14795	0.46	+0.0
3,329,960	-		HER17_RS14795	0.46	-1.0
3,329,960	-		HER17_RS14795	0.46	+1.6
3,329,985	-		HER17_RS14795	0.47	-0.8
3,329,991	+		HER17_RS14795	0.47	+0.0
3,330,008	+		HER17_RS14795	0.48	-0.2
3,330,009	-		HER17_RS14795	0.48	+0.3
3,330,009	-		HER17_RS14795	0.48	-0.6
3,330,009	-		HER17_RS14795	0.48	+0.1
3,330,082	+		HER17_RS14795	0.50	-0.7
3,330,104	+		HER17_RS14795	0.51	-0.4
3,330,105	-		HER17_RS14795	0.51	+0.8
3,330,223	+		HER17_RS14795	0.54	-0.4
3,330,223	+		HER17_RS14795	0.54	+1.2
3,330,223	+		HER17_RS14795	0.54	-1.3
3,330,223	+		HER17_RS14795	0.54	-1.6
3,330,223	+		HER17_RS14795	0.54	-0.4
3,330,223	+		HER17_RS14795	0.54	-3.2
3,330,224	-		HER17_RS14795	0.55	-0.7
3,330,224	-		HER17_RS14795	0.55	-0.4
3,330,225	+		HER17_RS14795	0.55	-0.4
3,330,225	+		HER17_RS14795	0.55	+0.4
3,330,225	+		HER17_RS14795	0.55	+0.6
3,330,226	-		HER17_RS14795	0.55	+1.9
3,330,226	-		HER17_RS14795	0.55	-0.7
3,330,226	-		HER17_RS14795	0.55	-0.8
3,330,297	+		HER17_RS14795	0.57	+0.0
3,330,298	-		HER17_RS14795	0.57	+0.6
3,330,432	+		HER17_RS14795	0.61	+0.0
3,330,433	-		HER17_RS14795	0.61	-1.2
3,330,455	+		HER17_RS14795	0.62	-0.1
3,330,456	-		HER17_RS14795	0.62	-0.4
3,330,510	+		HER17_RS14795	0.64	+0.4
3,330,574	-		HER17_RS14795	0.66	+0.0
3,330,587	+		HER17_RS14795	0.66	+0.3
3,330,588	-		HER17_RS14795	0.66	+0.6
3,330,588	-		HER17_RS14795	0.66	+0.4
3,330,676	+		HER17_RS14795	0.69	-0.1
3,330,676	+		HER17_RS14795	0.69	+0.8
3,330,677	-		HER17_RS14795	0.69	-0.2
3,330,677	-		HER17_RS14795	0.69	-0.1
3,330,690	+		HER17_RS14795	0.69	+1.1
3,330,918	+		HER17_RS14795	0.77	+1.6
3,330,982	+		HER17_RS14795	0.79	-0.3
3,331,007	+		HER17_RS14795	0.79	+0.2
3,331,171	+		HER17_RS14795	0.85	-0.7
3,331,171	+		HER17_RS14795	0.85	-0.8
3,331,171	+		HER17_RS14795	0.85	-0.4
3,331,172	-		HER17_RS14795	0.85	-0.8
3,331,172	-		HER17_RS14795	0.85	+2.4
3,331,172	-		HER17_RS14795	0.85	+0.5
3,331,172	-		HER17_RS14795	0.85	-0.1
3,331,190	+		HER17_RS14795	0.85	-1.4
3,331,255	+		HER17_RS14795	0.87	-0.5
3,331,255	+		HER17_RS14795	0.87	+0.4
3,331,256	-		HER17_RS14795	0.87	-0.5
3,331,267	+		HER17_RS14795	0.88	+0.1
3,331,267	+		HER17_RS14795	0.88	-0.1
3,331,268	-		HER17_RS14795	0.88	+0.8
3,331,269	+		HER17_RS14795	0.88	+0.7
3,331,270	-		HER17_RS14795	0.88	+0.2
3,331,270	-		HER17_RS14795	0.88	+0.3
3,331,299	+		HER17_RS14795	0.89	+0.4
3,331,300	-		HER17_RS14795	0.89	+1.1
3,331,348	+				-1.7
3,331,349	-				+0.4
3,331,349	-				-1.2
3,331,349	-				-0.7
3,331,471	-				+0.9
3,331,471	-				-1.7
3,331,497	+				+0.4
3,331,498	-				-2.2
3,331,498	-				+0.4
3,331,498	-				+0.6
3,331,553	+				+1.1
3,331,606	+				+0.1
3,331,606	+				-0.6
3,331,613	+				+0.8
3,331,616	+				+0.0
3,331,616	+				-0.2
3,331,616	+				-0.2
3,331,616	+				-0.4
3,331,617	-				+1.0
3,331,617	-				+1.7
3,331,617	-				+0.6
3,331,729	+				+0.4
3,331,730	-				-1.6
3,331,730	-				-1.0
3,331,730	-				+0.6
3,331,738	-				-1.7
3,331,739	+				+0.3
3,331,739	+				+0.8
3,331,739	+				-1.7
3,331,739	+				-1.0
3,331,766	+				-3.6
3,332,613	-				+0.4
3,332,613	-				-1.2