Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14455

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
3,249,982	-		HER17_RS14445	0.85	-1.0
3,250,026	+				+0.3
3,250,026	+				+0.5
3,250,026	+				+0.8
3,250,026	+				-0.0
3,250,026	+				-1.2
3,250,027	-				-0.1
3,250,027	-				-0.2
3,250,158	+				-1.0
3,250,158	+				-0.7
3,250,159	-				-1.7
3,250,165	-				-0.7
3,250,186	-				-1.2
3,250,189	-				-0.6
3,250,263	+		HER17_RS14450	0.34	-1.7
3,250,263	+		HER17_RS14450	0.34	-0.8
3,250,263	+		HER17_RS14450	0.34	-0.0
3,250,263	+		HER17_RS14450	0.34	-0.6
3,250,263	+		HER17_RS14450	0.34	-0.9
3,250,271	-		HER17_RS14450	0.37	+0.7
3,250,282	-		HER17_RS14450	0.40	+0.2
3,250,500	-				+0.3
3,250,763	+				-1.2
3,250,764	-				-0.0
3,250,804	-				-0.5
3,250,804	-				+0.3
3,250,823	-				-0.4
3,250,853	+				+2.6
3,250,854	-				+0.3
3,250,864	-				+2.2
3,250,935	-		HER17_RS14455	0.13	-0.9
3,250,935	-		HER17_RS14455	0.13	-1.5
3,250,935	-		HER17_RS14455	0.13	-0.6
3,251,027	+		HER17_RS14455	0.21	-2.6
3,251,028	-		HER17_RS14455	0.21	-0.4
3,251,064	+		HER17_RS14455	0.25	+0.6
3,251,064	+		HER17_RS14455	0.25	+0.6
3,251,065	-		HER17_RS14455	0.25	-0.9
3,251,074	+		HER17_RS14455	0.25	-0.4
3,251,074	+		HER17_RS14455	0.25	+0.2
3,251,074	+		HER17_RS14455	0.25	+0.4
3,251,101	-		HER17_RS14455	0.28	-0.8
3,251,117	+		HER17_RS14455	0.29	+0.3
3,251,153	+		HER17_RS14455	0.33	-1.0
3,251,153	+		HER17_RS14455	0.33	-0.2
3,251,153	+		HER17_RS14455	0.33	+0.6
3,251,153	+		HER17_RS14455	0.33	+0.7
3,251,198	-		HER17_RS14455	0.37	-2.0
3,251,297	+		HER17_RS14455	0.46	-0.4
3,251,298	-		HER17_RS14455	0.46	+1.8
3,251,387	-		HER17_RS14455	0.54	-1.6
3,251,402	+		HER17_RS14455	0.55	+0.7
3,251,402	+		HER17_RS14455	0.55	+1.6
3,251,403	-		HER17_RS14455	0.55	-1.0
3,251,403	-		HER17_RS14455	0.55	+0.1
3,251,403	-		HER17_RS14455	0.55	+0.6
3,251,435	+		HER17_RS14455	0.58	+1.2
3,251,436	-		HER17_RS14455	0.58	-0.4
3,251,470	-		HER17_RS14455	0.61	-0.2
3,251,470	-		HER17_RS14455	0.61	+1.4
3,251,634	-		HER17_RS14455	0.76	+0.6
3,251,634	-		HER17_RS14455	0.76	-1.3
3,251,678	+		HER17_RS14455	0.80	-1.1
3,251,678	+		HER17_RS14455	0.80	+1.3
3,251,679	-		HER17_RS14455	0.80	-0.2
3,251,679	-		HER17_RS14455	0.80	+0.3
3,251,680	+		HER17_RS14455	0.80	-1.0
3,251,680	+		HER17_RS14455	0.80	-0.6
3,251,680	+		HER17_RS14455	0.80	+0.4
3,251,680	+		HER17_RS14455	0.80	+0.2
3,251,681	-		HER17_RS14455	0.80	-1.4
3,251,681	-		HER17_RS14455	0.80	+0.2
3,251,681	-		HER17_RS14455	0.80	+2.2
3,251,695	+		HER17_RS14455	0.82	-1.7
3,251,696	-		HER17_RS14455	0.82	+0.9
3,251,722	+		HER17_RS14455	0.84	+0.8
3,251,722	+		HER17_RS14455	0.84	+0.8
3,251,722	+		HER17_RS14455	0.84	-1.0
3,251,722	+		HER17_RS14455	0.84	-1.7
3,251,723	-		HER17_RS14455	0.84	-0.5
3,251,723	-		HER17_RS14455	0.84	-0.4
3,251,723	-		HER17_RS14455	0.84	+1.1
3,251,728	+		HER17_RS14455	0.85	+1.4
3,251,728	+		HER17_RS14455	0.85	-0.0
3,251,739	-		HER17_RS14455	0.86	+1.2
3,251,740	+		HER17_RS14455	0.86	-1.6
3,251,741	-		HER17_RS14455	0.86	-0.7
3,251,741	-		HER17_RS14455	0.86	-0.4
3,251,741	-		HER17_RS14455	0.86	+1.2
3,251,822	+				-0.2
3,251,822	+				+0.1
3,251,822	+				+0.8
3,251,862	+				-1.1
3,251,862	+				-0.2
3,251,862	+				-0.2
3,251,862	+				+0.4
3,251,863	-				-0.4
3,251,894	+				+1.4
3,251,895	-				+2.3
3,251,897	+				+0.5
3,251,897	+				-0.7
3,251,897	+				+0.3
3,251,898	-				-0.8
3,251,898	-				+1.3
3,251,898	-				-0.6
3,251,898	-				-0.2
3,251,914	+				-0.6
3,251,914	+				-0.0
3,251,914	+				+0.2
3,251,914	+				+0.5
3,251,915	-				+0.6
3,251,915	-				+1.3
3,251,915	-				-0.1
3,251,917	-				+1.8
3,251,917	-				-0.4
3,251,933	-				-2.2
3,251,967	+				-0.3
3,251,990	+				+0.5
3,251,990	+				-1.4
3,251,991	-				+2.6
3,252,010	+				-0.5
3,252,011	-				+0.8
3,252,011	-				+0.4
3,252,011	-				-1.1
3,252,011	-				-0.4
3,252,066	+				+1.1
3,252,090	+				+0.6
3,252,090	+				-0.4
3,252,090	+				+0.9
3,252,091	-				-0.0
3,252,091	-				+0.7
3,252,091	-				-0.7
3,252,092	+				+0.6
3,252,092	+				+1.7
3,252,092	+				-2.3
3,252,092	+				-1.4
3,252,092	+				-0.7
3,252,092	+				-0.0
3,252,093	-				+0.4
3,252,093	-				-0.8
3,252,093	-				-0.0
3,252,093	-				-0.2
3,252,178	+		HER17_RS14460	0.16	-0.4
3,252,209	-		HER17_RS14460	0.18	-0.7
3,252,241	-		HER17_RS14460	0.21	+1.2
3,252,241	-		HER17_RS14460	0.21	+1.0
3,252,323	-		HER17_RS14460	0.29	-0.4
3,252,370	-		HER17_RS14460	0.34	-2.4
3,252,426	+		HER17_RS14460	0.39	-1.2
3,252,426	+		HER17_RS14460	0.39	-0.6
3,252,427	-		HER17_RS14460	0.39	+2.0
3,252,427	-		HER17_RS14460	0.39	+0.4
3,252,431	+		HER17_RS14460	0.39	+0.6
3,252,432	-		HER17_RS14460	0.39	-0.0
3,252,432	-		HER17_RS14460	0.39	-1.0
3,252,432	-		HER17_RS14460	0.39	-0.3
3,252,469	-		HER17_RS14460	0.43	+0.4
3,252,470	+		HER17_RS14460	0.43	+1.6
3,252,470	+		HER17_RS14460	0.43	-1.4
3,252,471	-		HER17_RS14460	0.43	+3.9
3,252,496	-		HER17_RS14460	0.45	-0.9
3,252,496	-		HER17_RS14460	0.45	-0.6
3,252,513	+		HER17_RS14460	0.47	+0.6
3,252,513	+		HER17_RS14460	0.47	+0.6
3,252,513	+		HER17_RS14460	0.47	+0.1
3,252,513	+		HER17_RS14460	0.47	+0.1
3,252,513	+		HER17_RS14460	0.47	-0.4
3,252,513	+		HER17_RS14460	0.47	+0.1
3,252,513	+		HER17_RS14460	0.47	-0.4
3,252,513	+		HER17_RS14460	0.47	+0.7
3,252,514	-		HER17_RS14460	0.47	-0.0
3,252,514	-		HER17_RS14460	0.47	+0.9
3,252,548	+		HER17_RS14460	0.50	+1.6
3,252,548	+		HER17_RS14460	0.50	+1.3
3,252,548	+		HER17_RS14460	0.50	+0.6
3,252,548	+		HER17_RS14460	0.50	+0.1
3,252,549	-		HER17_RS14460	0.50	+1.1
3,252,558	-		HER17_RS14460	0.51	-0.7
3,252,603	-		HER17_RS14460	0.56	-0.4
3,252,603	-		HER17_RS14460	0.56	+0.6
3,252,603	-		HER17_RS14460	0.56	-0.4
3,252,603	-		HER17_RS14460	0.56	+3.5
3,252,610	+		HER17_RS14460	0.56	-1.4
3,252,621	+		HER17_RS14460	0.57	+1.1
3,252,622	-		HER17_RS14460	0.57	+0.4
3,252,679	+		HER17_RS14460	0.63	-1.0
3,252,679	+		HER17_RS14460	0.63	-0.4
3,252,679	+		HER17_RS14460	0.63	+0.2
3,252,680	-		HER17_RS14460	0.63	-0.7
3,252,680	-		HER17_RS14460	0.63	+1.3
3,252,680	-		HER17_RS14460	0.63	+0.5
3,252,680	-		HER17_RS14460	0.63	-1.7
3,252,680	-		HER17_RS14460	0.63	+0.6
3,252,680	-		HER17_RS14460	0.63	+1.0
3,252,682	+		HER17_RS14460	0.63	+0.2
3,252,683	-		HER17_RS14460	0.63	-0.4
3,252,683	-		HER17_RS14460	0.63	-0.0
3,252,683	-		HER17_RS14460	0.63	-0.3
3,252,706	+		HER17_RS14460	0.65	-1.1
3,252,706	+		HER17_RS14460	0.65	-1.0
3,252,724	-		HER17_RS14460	0.67	-0.3
3,252,724	-		HER17_RS14460	0.67	+0.5
3,252,737	-		HER17_RS14460	0.68	+1.0
3,252,873	-		HER17_RS14460	0.81	+1.3
3,252,892	-		HER17_RS14460	0.83	+0.3