Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11600

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
2,577,563	+		HER17_RS11595	0.28	+0.3
2,577,564	-		HER17_RS11595	0.28	+0.2
2,577,564	-		HER17_RS11595	0.28	-1.1
2,577,730	+		HER17_RS11595	0.43	+0.1
2,577,730	+		HER17_RS11595	0.43	+1.3
2,577,731	-		HER17_RS11595	0.43	+1.1
2,577,734	+		HER17_RS11595	0.43	-0.3
2,577,734	+		HER17_RS11595	0.43	+3.3
2,577,734	+		HER17_RS11595	0.43	+0.7
2,577,734	+		HER17_RS11595	0.43	+0.3
2,577,735	-		HER17_RS11595	0.43	-0.3
2,577,735	-		HER17_RS11595	0.43	+0.5
2,577,754	+		HER17_RS11595	0.45	-0.7
2,577,754	+		HER17_RS11595	0.45	-0.1
2,577,754	+		HER17_RS11595	0.45	-0.4
2,577,755	-		HER17_RS11595	0.45	+0.0
2,577,787	+		HER17_RS11595	0.48	-0.5
2,577,787	+		HER17_RS11595	0.48	+0.3
2,577,787	+		HER17_RS11595	0.48	-0.4
2,577,787	+		HER17_RS11595	0.48	-1.0
2,577,787	+		HER17_RS11595	0.48	+1.1
2,577,787	+		HER17_RS11595	0.48	-0.9
2,577,787	+		HER17_RS11595	0.48	-0.7
2,577,788	-		HER17_RS11595	0.48	-2.3
2,577,788	-		HER17_RS11595	0.48	+0.9
2,577,788	-		HER17_RS11595	0.48	+0.7
2,577,788	-		HER17_RS11595	0.48	+0.4
2,577,789	+		HER17_RS11595	0.48	+2.0
2,577,790	-		HER17_RS11595	0.48	+0.7
2,577,790	-		HER17_RS11595	0.48	-0.3
2,577,790	-		HER17_RS11595	0.48	-0.3
2,577,853	-		HER17_RS11595	0.54	-1.7
2,578,008	+		HER17_RS11595	0.68	-0.3
2,578,045	-		HER17_RS11595	0.71	-0.1
2,578,060	-		HER17_RS11595	0.72	+0.5
2,578,199	+		HER17_RS11595	0.85	-3.2
2,578,224	+		HER17_RS11595	0.87	+0.8
2,578,239	-		HER17_RS11595	0.89	-1.3
2,578,282	+				+0.7
2,578,282	+				+0.2
2,578,283	-				-2.2
2,578,283	-				-1.4
2,578,321	+				+0.3
2,578,321	+				-0.2
2,578,321	+				+0.7
2,578,322	-				-1.5
2,578,322	-				-2.3
2,578,322	-				-1.7
2,578,322	-				+2.6
2,578,322	-				+1.5
2,578,390	+				-2.0
2,578,419	+				-0.4
2,578,428	+				-1.4
2,578,429	-				-0.9
2,578,429	-				-1.0
2,578,441	+				-2.7
2,578,441	+				-1.9
2,578,478	+				+0.8
2,578,484	+				-0.6
2,578,563	-				-0.5
2,578,563	-				-0.6
2,578,563	-				-1.7
2,578,624	+				+0.3
2,578,624	+				+0.9
2,578,625	-				-2.3
2,578,666	-		HER17_RS11600	0.12	-0.4
2,578,666	-		HER17_RS11600	0.12	-0.5
2,578,700	-		HER17_RS11600	0.16	+0.3
2,578,748	+		HER17_RS11600	0.21	+0.5
2,578,748	+		HER17_RS11600	0.21	+0.2
2,578,748	+		HER17_RS11600	0.21	+0.1
2,578,748	+		HER17_RS11600	0.21	-0.4
2,578,749	-		HER17_RS11600	0.21	-0.2
2,578,749	-		HER17_RS11600	0.21	-1.7
2,578,767	+		HER17_RS11600	0.23	+0.1
2,578,767	+		HER17_RS11600	0.23	+0.4
2,578,768	-		HER17_RS11600	0.24	+0.7
2,578,821	-		HER17_RS11600	0.30	-0.3
2,578,855	+		HER17_RS11600	0.33	-0.1
2,578,856	-		HER17_RS11600	0.34	+0.4
2,578,875	+		HER17_RS11600	0.36	-2.0
2,578,885	-		HER17_RS11600	0.37	-0.4
2,578,885	-		HER17_RS11600	0.37	+0.9
2,578,887	+		HER17_RS11600	0.37	+1.1
2,578,893	+		HER17_RS11600	0.38	+0.6
2,578,893	+		HER17_RS11600	0.38	-0.0
2,578,902	+		HER17_RS11600	0.39	-0.8
2,578,902	+		HER17_RS11600	0.39	+0.9
2,578,924	-		HER17_RS11600	0.41	+0.7
2,578,924	-		HER17_RS11600	0.41	-0.3
2,578,926	-		HER17_RS11600	0.42	-1.3
2,578,926	-		HER17_RS11600	0.42	+0.3
2,578,933	+		HER17_RS11600	0.42	-0.7
2,579,001	-		HER17_RS11600	0.50	+0.3
2,579,097	+		HER17_RS11600	0.61	+1.5
2,579,097	+		HER17_RS11600	0.61	+0.3
2,579,105	+		HER17_RS11600	0.62	+0.7
2,579,105	+		HER17_RS11600	0.62	-2.2
2,579,105	+		HER17_RS11600	0.62	+0.3
2,579,106	-		HER17_RS11600	0.62	+0.5
2,579,106	-		HER17_RS11600	0.62	-0.5
2,579,106	-		HER17_RS11600	0.62	-0.6
2,579,124	-		HER17_RS11600	0.64	+0.3
2,579,183	+		HER17_RS11600	0.71	+1.6
2,579,184	-		HER17_RS11600	0.71	+0.3
2,579,205	+		HER17_RS11600	0.73	+0.9
2,579,206	-		HER17_RS11600	0.73	-0.7
2,579,206	-		HER17_RS11600	0.73	+1.3
2,579,206	-		HER17_RS11600	0.73	+1.9
2,579,209	-		HER17_RS11600	0.74	-0.7
2,579,209	-		HER17_RS11600	0.74	-0.2
2,579,227	+		HER17_RS11600	0.76	+1.4
2,579,227	+		HER17_RS11600	0.76	-0.7
2,579,257	-		HER17_RS11600	0.79	+1.8
2,579,286	+		HER17_RS11600	0.82	+0.3
2,579,287	-		HER17_RS11600	0.83	+0.8
2,579,287	-		HER17_RS11600	0.83	-0.3
2,579,316	+		HER17_RS11600	0.86	-0.4
2,579,316	+		HER17_RS11600	0.86	-0.9
2,579,316	+		HER17_RS11600	0.86	+2.1
2,579,317	-		HER17_RS11600	0.86	+0.3
2,579,369	+				-2.3
2,579,376	+				-0.3
2,579,379	-				+0.5
2,579,379	-				-0.7
2,579,379	-				-0.9
2,579,379	-				+1.9
2,579,379	-				-0.4
2,579,425	-				-0.2
2,579,470	-				-0.3
2,579,481	+				+0.5
2,579,481	+				-0.1
2,579,497	+				-2.3
2,579,498	-				+1.6
2,579,498	-				+0.8
2,579,498	-				+0.5
2,579,522	-				+1.4
2,579,522	-				-0.5
2,579,522	-				-0.3
2,579,560	-				-1.0
2,579,574	+				-0.0
2,579,575	-				+2.9
2,579,575	-				+1.9
2,579,575	-				+0.6
2,579,575	-				-0.0
2,579,618	+				-0.7
2,579,628	+				+1.7
2,579,628	+				+0.4
2,579,629	-				-0.2
2,579,629	-				-2.3
2,579,629	-				-1.7
2,579,636	+				+0.3
2,579,637	-				+1.1
2,579,643	+				+2.7
2,579,644	-				+0.7
2,579,656	+				+1.3
2,579,657	-				+1.4
2,579,720	+				-2.7
2,579,721	-				+0.6
2,579,721	-				+0.3
2,579,766	-				-0.7
2,579,766	-				+0.6
2,579,858	+		HER17_RS11605	0.83	+0.6
2,579,859	-		HER17_RS11605	0.84	+0.6
2,579,859	-		HER17_RS11605	0.84	-1.3
2,579,901	+				-0.3
2,579,901	+				+0.5
2,579,902	-				-1.7
2,579,904	-				+1.5
2,579,956	+				-0.7
2,580,060	+				-0.4
2,580,061	-				+0.1
2,580,061	-				+1.5
2,580,096	-				+0.1
2,580,112	+				+0.0
2,580,112	+				-0.7
2,580,119	+				+0.1
2,580,119	+				+2.0
2,580,120	-				-0.1
2,580,141	+				-0.7
2,580,146	+				+0.9
2,580,146	+				-0.7
2,580,146	+				+1.4
2,580,146	+				+0.2
2,580,146	+				+1.3
2,580,146	+				-0.3
2,580,150	+				-1.5
2,580,203	-				+0.3