Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07715

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
1,710,630	+				-0.1
1,710,751	+				+0.5
1,710,765	+				-0.2
1,710,766	-				-1.8
1,710,816	-				+2.2
1,710,816	-				+2.3
1,710,816	-				+3.1
1,710,816	-				+0.7
1,710,865	+				-0.7
1,710,869	+				+0.5
1,710,869	+				-1.1
1,710,877	+				-1.1
1,710,910	+				+0.4
1,710,911	-				+1.7
1,710,911	-				-1.5
1,710,911	-				+2.6
1,710,939	-				+3.1
1,711,090	+		HER17_RS07710	0.18	+0.9
1,711,090	+		HER17_RS07710	0.18	+3.8
1,711,090	+		HER17_RS07710	0.18	+2.8
1,711,090	+		HER17_RS07710	0.18	+1.7
1,711,091	-		HER17_RS07710	0.18	+2.9
1,711,196	-		HER17_RS07710	0.34	+1.0
1,711,197	+		HER17_RS07710	0.34	+1.3
1,711,197	+		HER17_RS07710	0.34	+2.7
1,711,198	-		HER17_RS07710	0.35	+1.5
1,711,198	-		HER17_RS07710	0.35	+3.2
1,711,198	-		HER17_RS07710	0.35	+2.3
1,711,198	-		HER17_RS07710	0.35	+0.8
1,711,216	+		HER17_RS07710	0.37	+3.5
1,711,221	-		HER17_RS07710	0.38	+3.2
1,711,221	-		HER17_RS07710	0.38	+2.4
1,711,221	-		HER17_RS07710	0.38	+2.6
1,711,222	+		HER17_RS07710	0.38	+1.9
1,711,223	-		HER17_RS07710	0.38	+2.8
1,711,223	-		HER17_RS07710	0.38	+2.7
1,711,272	-		HER17_RS07710	0.46	+2.4
1,711,340	+		HER17_RS07710	0.56	+2.5
1,711,340	+		HER17_RS07710	0.56	+2.2
1,711,342	+		HER17_RS07710	0.56	+2.1
1,711,342	+		HER17_RS07710	0.56	+3.1
1,711,374	+		HER17_RS07710	0.61	+3.0
1,711,374	+		HER17_RS07710	0.61	+2.2
1,711,374	+		HER17_RS07710	0.61	+3.6
1,711,374	+		HER17_RS07710	0.61	+1.9
1,711,375	-		HER17_RS07710	0.61	+2.8
1,711,375	-		HER17_RS07710	0.61	+2.6
1,711,375	-		HER17_RS07710	0.61	+0.1
1,711,375	-		HER17_RS07710	0.61	+3.5
1,711,432	-		HER17_RS07710	0.70	-0.7
1,711,438	+		HER17_RS07710	0.71	+3.9
1,711,439	-		HER17_RS07710	0.71	+0.5
1,711,443	+		HER17_RS07710	0.72	-0.1
1,711,502	-		HER17_RS07710	0.81	+2.4
1,711,528	+		HER17_RS07710	0.85	+2.3
1,711,528	+		HER17_RS07710	0.85	+3.6
1,711,529	-		HER17_RS07710	0.85	+2.6
1,711,529	-		HER17_RS07710	0.85	+2.0
1,711,529	-		HER17_RS07710	0.85	+1.4
1,711,529	-		HER17_RS07710	0.85	+3.1
1,711,546	+		HER17_RS07710	0.88	+2.4
1,711,614	+				+1.3
1,711,614	+				-0.1
1,711,614	+				-0.5
1,711,615	-				-0.3
1,711,615	-				-0.1
1,711,615	-				+0.4
1,711,615	-				+1.5
1,711,618	+				-0.9
1,711,618	+				+1.1
1,711,618	+				-1.1
1,711,689	+				-1.2
1,711,689	+				+0.5
1,711,689	+				-1.8
1,711,690	-				-1.5
1,711,690	-				-0.3
1,711,703	+				+1.5
1,711,704	-				-0.5
1,711,713	+				+0.6
1,711,714	-				-0.1
1,711,714	-				-0.3
1,711,735	+				-0.8
1,711,756	-				-1.4
1,711,814	+		HER17_RS07715	0.11	-0.9
1,711,815	-		HER17_RS07715	0.11	-0.4
1,711,870	-		HER17_RS07715	0.14	-0.3
1,711,870	-		HER17_RS07715	0.14	-0.7
1,711,870	-		HER17_RS07715	0.14	-0.5
1,711,870	-		HER17_RS07715	0.14	-1.1
1,711,870	-		HER17_RS07715	0.14	-1.4
1,711,870	-		HER17_RS07715	0.14	-0.8
1,711,894	-		HER17_RS07715	0.15	+0.3
1,711,894	-		HER17_RS07715	0.15	+0.7
1,711,895	+		HER17_RS07715	0.15	+0.5
1,711,895	+		HER17_RS07715	0.15	-0.8
1,711,896	-		HER17_RS07715	0.15	+0.5
1,711,917	-		HER17_RS07715	0.16	-0.1
1,711,924	-		HER17_RS07715	0.17	-0.8
1,712,001	+		HER17_RS07715	0.21	+0.2
1,712,001	+		HER17_RS07715	0.21	-1.5
1,712,044	+		HER17_RS07715	0.23	+0.8
1,712,045	-		HER17_RS07715	0.23	-0.5
1,712,047	+		HER17_RS07715	0.23	-1.4
1,712,047	+		HER17_RS07715	0.23	+0.6
1,712,048	-		HER17_RS07715	0.23	+0.3
1,712,182	-		HER17_RS07715	0.31	+0.2
1,712,237	-		HER17_RS07715	0.34	+0.0
1,712,381	+		HER17_RS07715	0.42	+1.0
1,712,419	-		HER17_RS07715	0.44	-1.5
1,712,463	+		HER17_RS07715	0.46	-0.1
1,712,463	+		HER17_RS07715	0.46	-1.8
1,712,464	-		HER17_RS07715	0.46	+0.1
1,712,545	+		HER17_RS07715	0.50	+0.7
1,712,546	-		HER17_RS07715	0.51	-0.5
1,712,546	-		HER17_RS07715	0.51	+0.2
1,712,679	+		HER17_RS07715	0.58	-0.3
1,712,680	-		HER17_RS07715	0.58	-0.9
1,712,683	+		HER17_RS07715	0.58	+1.4
1,712,825	+		HER17_RS07715	0.66	+0.7
1,712,825	+		HER17_RS07715	0.66	+1.3
1,712,882	-		HER17_RS07715	0.69	-1.1
1,712,902	-		HER17_RS07715	0.70	-1.1
1,712,903	+		HER17_RS07715	0.70	-0.0
1,712,903	+		HER17_RS07715	0.70	-0.2
1,712,904	-		HER17_RS07715	0.70	-0.3
1,712,904	-		HER17_RS07715	0.70	+1.5
1,712,904	-		HER17_RS07715	0.70	-0.4
1,712,904	-		HER17_RS07715	0.70	-1.4
1,712,904	-		HER17_RS07715	0.70	-0.5
1,712,904	-		HER17_RS07715	0.70	+0.1
1,712,934	+		HER17_RS07715	0.72	-0.5
1,712,935	-		HER17_RS07715	0.72	-2.1
1,712,935	-		HER17_RS07715	0.72	-0.7
1,712,935	-		HER17_RS07715	0.72	+0.2
1,712,972	+		HER17_RS07715	0.74	-1.6
1,712,980	+		HER17_RS07715	0.74	-0.5
1,712,981	-		HER17_RS07715	0.74	-0.0
1,712,981	-		HER17_RS07715	0.74	-0.2
1,713,071	-		HER17_RS07715	0.79	-0.3
1,713,071	-		HER17_RS07715	0.79	-0.2
1,713,215	+		HER17_RS07715	0.87	-1.3
1,713,215	+		HER17_RS07715	0.87	+0.5
1,713,216	-		HER17_RS07715	0.87	-1.1
1,713,257	+		HER17_RS07715	0.89	-0.6
1,713,258	-		HER17_RS07715	0.89	-2.6
1,713,258	-		HER17_RS07715	0.89	-1.2
1,713,281	+				+1.5
1,713,281	+				+0.9
1,713,342	+				-1.8
1,713,343	-				-0.6
1,713,469	+				+2.8
1,713,475	+				+0.5
1,713,475	+				-0.4
1,713,475	+				+0.1
1,713,478	+				+0.1
1,713,495	+				-0.3
1,713,495	+				-1.1
1,713,495	+				+1.1
1,713,503	+				-0.5