Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04130 and HER17_RS04135 are separated by 132 nucleotides HER17_RS04135 and HER17_RS04140 overlap by 8 nucleotides HER17_RS04140 and HER17_RS04145 are separated by 448 nucleotides
HER17_RS04130: HER17_RS04130 - phosphopyruvate hydratase, at 940,734 to 942,029
_RS04130
HER17_RS04135: HER17_RS04135 - SDR family NAD(P)-dependent oxidoreductase, at 942,162 to 942,884
_RS04135
HER17_RS04140: HER17_RS04140 - TetR/AcrR family transcriptional regulator, at 942,877 to 943,500
_RS04140
HER17_RS04145: HER17_RS04145 - TonB-dependent siderophore receptor, at 943,949 to 946,087
_RS04145
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 942.017 kb on + strand at 942.089 kb on + strand at 942.090 kb on - strand at 942.093 kb on + strand at 942.094 kb on - strand at 942.095 kb on + strand at 942.096 kb on - strand at 942.163 kb on + strand at 942.164 kb on - strand at 942.164 kb on - strand at 942.164 kb on - strand at 942.196 kb on - strand at 942.225 kb on + strand at 942.228 kb on + strand at 942.228 kb on + strand at 942.229 kb on - strand at 942.314 kb on - strand, within HER17_RS04135 at 942.314 kb on - strand, within HER17_RS04135 at 942.326 kb on + strand, within HER17_RS04135 at 942.327 kb on - strand, within HER17_RS04135 at 942.330 kb on + strand, within HER17_RS04135 at 942.331 kb on - strand, within HER17_RS04135 at 942.363 kb on - strand, within HER17_RS04135 at 942.395 kb on - strand, within HER17_RS04135 at 942.401 kb on - strand, within HER17_RS04135 at 942.404 kb on + strand, within HER17_RS04135 at 942.404 kb on + strand, within HER17_RS04135 at 942.405 kb on - strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.530 kb on + strand, within HER17_RS04135 at 942.531 kb on - strand, within HER17_RS04135 at 942.549 kb on - strand, within HER17_RS04135 at 942.631 kb on + strand, within HER17_RS04135 at 942.632 kb on - strand, within HER17_RS04135 at 942.635 kb on - strand, within HER17_RS04135 at 942.675 kb on + strand, within HER17_RS04135 at 942.675 kb on + strand, within HER17_RS04135 at 942.676 kb on - strand, within HER17_RS04135 at 942.676 kb on - strand, within HER17_RS04135 at 942.753 kb on + strand, within HER17_RS04135 at 942.754 kb on - strand, within HER17_RS04135 at 942.873 kb on - strand at 942.879 kb on - strand at 942.910 kb on + strand at 942.918 kb on - strand at 942.918 kb on - strand at 942.918 kb on - strand at 942.941 kb on + strand, within HER17_RS04140 at 942.941 kb on + strand, within HER17_RS04140 at 942.942 kb on - strand, within HER17_RS04140 at 942.942 kb on - strand, within HER17_RS04140 at 942.942 kb on - strand, within HER17_RS04140 at 942.955 kb on - strand, within HER17_RS04140 at 942.955 kb on - strand, within HER17_RS04140 at 942.957 kb on + strand, within HER17_RS04140 at 943.015 kb on + strand, within HER17_RS04140 at 943.041 kb on + strand, within HER17_RS04140 at 943.042 kb on - strand, within HER17_RS04140 at 943.042 kb on - strand, within HER17_RS04140 at 943.066 kb on - strand, within HER17_RS04140 at 943.102 kb on - strand, within HER17_RS04140 at 943.102 kb on - strand, within HER17_RS04140 at 943.117 kb on + strand, within HER17_RS04140 at 943.168 kb on - strand, within HER17_RS04140 at 943.168 kb on - strand, within HER17_RS04140 at 943.181 kb on + strand, within HER17_RS04140 at 943.181 kb on + strand, within HER17_RS04140 at 943.440 kb on + strand at 943.486 kb on + strand at 943.487 kb on - strand at 943.488 kb on + strand at 943.488 kb on + strand at 943.488 kb on + strand at 943.500 kb on + strand at 943.500 kb on + strand at 943.501 kb on - strand at 943.527 kb on + strand at 943.527 kb on + strand at 943.531 kb on + strand at 943.531 kb on + strand at 943.532 kb on - strand at 943.532 kb on - strand at 943.532 kb on - strand at 943.544 kb on - strand at 943.550 kb on + strand at 943.576 kb on + strand at 943.577 kb on - strand at 943.677 kb on + strand at 943.677 kb on + strand at 943.678 kb on - strand at 943.698 kb on - strand at 943.727 kb on + strand at 943.728 kb on - strand at 943.728 kb on - strand at 943.777 kb on - strand at 943.820 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.826 kb on - strand at 943.826 kb on - strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.868 kb on - strand at 943.868 kb on - strand at 943.869 kb on + strand at 943.869 kb on + strand at 943.869 kb on + strand at 943.869 kb on + strand at 943.870 kb on - strand at 943.870 kb on - strand at 943.870 kb on - strand at 943.887 kb on + strand at 943.888 kb on - strand at 943.888 kb on - strand at 943.938 kb on + strand at 944.048 kb on - strand at 944.142 kb on - strand at 944.214 kb on - strand, within HER17_RS04145 at 944.214 kb on - strand, within HER17_RS04145 at 944.248 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.320 kb on - strand, within HER17_RS04145 at 944.377 kb on + strand, within HER17_RS04145 at 944.429 kb on - strand, within HER17_RS04145 at 944.473 kb on + strand, within HER17_RS04145 at 944.483 kb on + strand, within HER17_RS04145
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 942,017 + -3.2 942,089 + -0.2 942,090 - -1.1 942,093 + +0.9 942,094 - +0.8 942,095 + -0.2 942,096 - -0.0 942,163 + -0.2 942,164 - -0.1 942,164 - +0.4 942,164 - +0.6 942,196 - -0.4 942,225 + -1.1 942,228 + -0.4 942,228 + -0.3 942,229 - +0.6 942,314 - HER17_RS04135 0.21 +0.4 942,314 - HER17_RS04135 0.21 +0.8 942,326 + HER17_RS04135 0.23 -2.2 942,327 - HER17_RS04135 0.23 +0.6 942,330 + HER17_RS04135 0.23 +1.4 942,331 - HER17_RS04135 0.23 -0.1 942,363 - HER17_RS04135 0.28 -0.4 942,395 - HER17_RS04135 0.32 +0.8 942,401 - HER17_RS04135 0.33 +1.1 942,404 + HER17_RS04135 0.33 +0.2 942,404 + HER17_RS04135 0.33 -0.6 942,405 - HER17_RS04135 0.34 -0.7 942,442 + HER17_RS04135 0.39 +0.2 942,442 + HER17_RS04135 0.39 -1.3 942,442 + HER17_RS04135 0.39 +0.4 942,442 + HER17_RS04135 0.39 -1.4 942,442 + HER17_RS04135 0.39 -0.5 942,442 + HER17_RS04135 0.39 +0.7 942,443 - HER17_RS04135 0.39 +1.5 942,443 - HER17_RS04135 0.39 -0.7 942,443 - HER17_RS04135 0.39 +0.4 942,443 - HER17_RS04135 0.39 +0.2 942,443 - HER17_RS04135 0.39 +0.0 942,443 - HER17_RS04135 0.39 -0.1 942,530 + HER17_RS04135 0.51 -0.4 942,531 - HER17_RS04135 0.51 -0.7 942,549 - HER17_RS04135 0.54 +0.8 942,631 + HER17_RS04135 0.65 +1.8 942,632 - HER17_RS04135 0.65 +1.0 942,635 - HER17_RS04135 0.65 +1.2 942,675 + HER17_RS04135 0.71 +0.1 942,675 + HER17_RS04135 0.71 +0.1 942,676 - HER17_RS04135 0.71 -0.3 942,676 - HER17_RS04135 0.71 +1.0 942,753 + HER17_RS04135 0.82 -0.6 942,754 - HER17_RS04135 0.82 -0.2 942,873 - -0.3 942,879 - +0.6 942,910 + -0.2 942,918 - -1.6 942,918 - +0.1 942,918 - +1.3 942,941 + HER17_RS04140 0.10 +1.1 942,941 + HER17_RS04140 0.10 -0.7 942,942 - HER17_RS04140 0.10 +1.0 942,942 - HER17_RS04140 0.10 -0.4 942,942 - HER17_RS04140 0.10 -0.5 942,955 - HER17_RS04140 0.12 +0.1 942,955 - HER17_RS04140 0.12 -0.1 942,957 + HER17_RS04140 0.13 +0.8 943,015 + HER17_RS04140 0.22 -0.2 943,041 + HER17_RS04140 0.26 -2.9 943,042 - HER17_RS04140 0.26 -2.0 943,042 - HER17_RS04140 0.26 +1.4 943,066 - HER17_RS04140 0.30 -0.2 943,102 - HER17_RS04140 0.36 -0.7 943,102 - HER17_RS04140 0.36 -1.2 943,117 + HER17_RS04140 0.38 -0.4 943,168 - HER17_RS04140 0.47 +1.0 943,168 - HER17_RS04140 0.47 -1.0 943,181 + HER17_RS04140 0.49 +0.5 943,181 + HER17_RS04140 0.49 -1.0 943,440 + +0.3 943,486 + -1.5 943,487 - +0.1 943,488 + +1.6 943,488 + +0.8 943,488 + -0.6 943,500 + -0.7 943,500 + +0.3 943,501 - -0.3 943,527 + -0.7 943,527 + -0.7 943,531 + +0.5 943,531 + -1.7 943,532 - -1.2 943,532 - -0.2 943,532 - -0.0 943,544 - -0.6 943,550 + -1.2 943,576 + +0.4 943,577 - -0.3 943,677 + +0.3 943,677 + +0.7 943,678 - +0.6 943,698 - +0.8 943,727 + -1.0 943,728 - +1.4 943,728 - -0.0 943,777 - +0.4 943,820 + -0.7 943,822 + -0.0 943,822 + +0.1 943,822 + -1.7 943,822 + +0.8 943,822 + -0.2 943,822 + +0.3 943,823 - -1.9 943,823 - -0.2 943,823 - +0.6 943,823 - -0.2 943,823 - -0.5 943,823 - -0.7 943,823 - +0.9 943,823 - +0.2 943,826 - -0.5 943,826 - -1.8 943,867 + +0.4 943,867 + +0.0 943,867 + +0.1 943,867 + +1.1 943,867 + +1.2 943,867 + +3.8 943,868 - -0.9 943,868 - +0.3 943,869 + +1.4 943,869 + +0.4 943,869 + +0.4 943,869 + -0.6 943,870 - -0.3 943,870 - -0.3 943,870 - +0.1 943,887 + -1.2 943,888 - +0.1 943,888 - -0.7 943,938 + -1.2 944,048 - +0.4 944,142 - +0.8 944,214 - HER17_RS04145 0.12 -1.3 944,214 - HER17_RS04145 0.12 +1.3 944,248 + HER17_RS04145 0.14 -0.9 944,256 + HER17_RS04145 0.14 -0.3 944,256 + HER17_RS04145 0.14 -1.0 944,256 + HER17_RS04145 0.14 -0.2 944,256 + HER17_RS04145 0.14 -0.4 944,257 - HER17_RS04145 0.14 -0.3 944,257 - HER17_RS04145 0.14 +0.0 944,257 - HER17_RS04145 0.14 +0.2 944,257 - HER17_RS04145 0.14 -2.9 944,320 - HER17_RS04145 0.17 +2.2 944,377 + HER17_RS04145 0.20 -2.3 944,429 - HER17_RS04145 0.22 +0.5 944,473 + HER17_RS04145 0.24 +0.1 944,483 + HER17_RS04145 0.25 -0.3
Or see this region's nucleotide sequence