Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03970 and HER17_RS03975 are separated by 171 nucleotides HER17_RS03975 and HER17_RS03980 are separated by 474 nucleotides
HER17_RS03970: HER17_RS03970 - hemolysin family protein, at 892,908 to 894,233
_RS03970
HER17_RS03975: HER17_RS03975 - peptide-methionine (S)-S-oxide reductase MsrA, at 894,405 to 895,043
_RS03975
HER17_RS03980: HER17_RS03980 - autotransporter assembly complex protein TamA, at 895,518 to 897,233
_RS03980
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 893.563 kb on + strand, within HER17_RS03970 at 893.659 kb on - strand, within HER17_RS03970 at 893.692 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.696 kb on + strand, within HER17_RS03970 at 893.721 kb on - strand, within HER17_RS03970 at 893.827 kb on - strand, within HER17_RS03970 at 893.827 kb on - strand, within HER17_RS03970 at 893.858 kb on + strand, within HER17_RS03970 at 893.858 kb on + strand, within HER17_RS03970 at 893.859 kb on - strand, within HER17_RS03970 at 893.859 kb on - strand, within HER17_RS03970 at 893.895 kb on - strand, within HER17_RS03970 at 893.913 kb on + strand, within HER17_RS03970 at 893.940 kb on - strand, within HER17_RS03970 at 894.140 kb on + strand at 894.216 kb on + strand at 894.216 kb on + strand at 894.220 kb on - strand at 894.234 kb on - strand at 894.234 kb on - strand at 894.249 kb on + strand at 894.249 kb on + strand at 894.303 kb on + strand at 894.303 kb on + strand at 894.303 kb on + strand at 894.304 kb on - strand at 894.318 kb on + strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.319 kb on - strand at 894.327 kb on + strand at 894.327 kb on + strand at 894.373 kb on + strand at 894.373 kb on + strand at 894.374 kb on - strand at 894.374 kb on - strand at 894.374 kb on - strand at 894.375 kb on + strand at 894.376 kb on - strand at 894.376 kb on - strand at 894.376 kb on - strand at 894.442 kb on - strand at 894.475 kb on + strand, within HER17_RS03975 at 894.476 kb on - strand, within HER17_RS03975 at 894.476 kb on - strand, within HER17_RS03975 at 894.499 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.502 kb on + strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.503 kb on - strand, within HER17_RS03975 at 894.623 kb on + strand, within HER17_RS03975 at 894.623 kb on + strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.814 kb on + strand, within HER17_RS03975 at 894.824 kb on + strand, within HER17_RS03975 at 894.826 kb on + strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.905 kb on + strand, within HER17_RS03975 at 894.906 kb on - strand, within HER17_RS03975 at 894.997 kb on - strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.053 kb on - strand at 895.062 kb on + strand at 895.063 kb on - strand at 895.071 kb on + strand at 895.071 kb on + strand at 895.076 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.124 kb on + strand at 895.125 kb on - strand at 895.139 kb on + strand at 895.139 kb on + strand at 895.140 kb on - strand at 895.146 kb on - strand at 895.146 kb on - strand at 895.150 kb on + strand at 895.150 kb on + strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.157 kb on + strand at 895.203 kb on + strand at 895.204 kb on - strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.230 kb on - strand at 895.232 kb on + strand at 895.233 kb on - strand at 895.289 kb on + strand at 895.289 kb on + strand at 895.324 kb on + strand at 895.324 kb on + strand at 895.336 kb on + strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.339 kb on - strand at 895.339 kb on - strand at 895.346 kb on - strand at 895.346 kb on - strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.378 kb on - strand at 895.396 kb on + strand at 895.397 kb on - strand at 895.472 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.533 kb on - strand at 895.533 kb on - strand at 895.597 kb on + strand at 895.597 kb on + strand at 895.621 kb on + strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.625 kb on + strand at 895.625 kb on + strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.860 kb on + strand, within HER17_RS03980 at 895.861 kb on - strand, within HER17_RS03980 at 895.958 kb on - strand, within HER17_RS03980 at 895.968 kb on + strand, within HER17_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 893,563 + HER17_RS03970 0.49 -0.2 893,659 - HER17_RS03970 0.57 +0.7 893,692 + HER17_RS03970 0.59 +0.6 893,696 + HER17_RS03970 0.59 +1.2 893,696 + HER17_RS03970 0.59 +0.1 893,696 + HER17_RS03970 0.59 +0.1 893,696 + HER17_RS03970 0.59 -0.2 893,696 + HER17_RS03970 0.59 -0.8 893,721 - HER17_RS03970 0.61 +0.8 893,827 - HER17_RS03970 0.69 -0.1 893,827 - HER17_RS03970 0.69 -2.5 893,858 + HER17_RS03970 0.72 +1.3 893,858 + HER17_RS03970 0.72 -0.2 893,859 - HER17_RS03970 0.72 -0.5 893,859 - HER17_RS03970 0.72 -1.8 893,895 - HER17_RS03970 0.74 +0.2 893,913 + HER17_RS03970 0.76 +0.7 893,940 - HER17_RS03970 0.78 +0.2 894,140 + +0.9 894,216 + -0.3 894,216 + +0.1 894,220 - -0.2 894,234 - -1.5 894,234 - -1.2 894,249 + -1.6 894,249 + -0.2 894,303 + -0.3 894,303 + +0.6 894,303 + -1.2 894,304 - +0.3 894,318 + -0.3 894,319 - -0.2 894,319 - +0.6 894,319 - -0.2 894,319 - +1.4 894,319 - +0.4 894,319 - -0.4 894,319 - +1.8 894,319 - -0.3 894,327 + +0.7 894,327 + +3.2 894,373 + +0.3 894,373 + +0.6 894,374 - -0.2 894,374 - +1.4 894,374 - +0.3 894,375 + -0.1 894,376 - +0.8 894,376 - +0.1 894,376 - -1.2 894,442 - -0.4 894,475 + HER17_RS03975 0.11 +0.3 894,476 - HER17_RS03975 0.11 +0.6 894,476 - HER17_RS03975 0.11 +0.3 894,499 + HER17_RS03975 0.15 +0.4 894,502 + HER17_RS03975 0.15 -0.4 894,502 + HER17_RS03975 0.15 -1.9 894,502 + HER17_RS03975 0.15 -1.7 894,502 + HER17_RS03975 0.15 -0.9 894,502 + HER17_RS03975 0.15 +0.8 894,502 + HER17_RS03975 0.15 -0.2 894,502 + HER17_RS03975 0.15 +0.5 894,503 - HER17_RS03975 0.15 +0.6 894,503 - HER17_RS03975 0.15 +2.3 894,503 - HER17_RS03975 0.15 -0.1 894,503 - HER17_RS03975 0.15 +0.7 894,503 - HER17_RS03975 0.15 +0.6 894,623 + HER17_RS03975 0.34 -0.2 894,623 + HER17_RS03975 0.34 +1.3 894,624 - HER17_RS03975 0.34 -0.7 894,624 - HER17_RS03975 0.34 +0.5 894,625 + HER17_RS03975 0.34 -0.3 894,625 + HER17_RS03975 0.34 +0.3 894,625 + HER17_RS03975 0.34 +1.3 894,625 + HER17_RS03975 0.34 -1.1 894,626 - HER17_RS03975 0.35 -0.2 894,626 - HER17_RS03975 0.35 -1.2 894,626 - HER17_RS03975 0.35 -1.5 894,626 - HER17_RS03975 0.35 -0.1 894,626 - HER17_RS03975 0.35 -0.2 894,629 + HER17_RS03975 0.35 -1.0 894,629 + HER17_RS03975 0.35 -0.9 894,630 - HER17_RS03975 0.35 -0.0 894,630 - HER17_RS03975 0.35 +2.3 894,721 + HER17_RS03975 0.49 +0.1 894,721 + HER17_RS03975 0.49 +0.5 894,721 + HER17_RS03975 0.49 -0.6 894,786 + HER17_RS03975 0.60 +1.1 894,786 + HER17_RS03975 0.60 -0.7 894,786 + HER17_RS03975 0.60 +1.3 894,786 + HER17_RS03975 0.60 +0.4 894,786 + HER17_RS03975 0.60 +1.3 894,787 - HER17_RS03975 0.60 -0.2 894,787 - HER17_RS03975 0.60 +0.9 894,787 - HER17_RS03975 0.60 -1.7 894,814 + HER17_RS03975 0.64 +1.0 894,824 + HER17_RS03975 0.66 -0.4 894,826 + HER17_RS03975 0.66 -2.2 894,827 - HER17_RS03975 0.66 -0.7 894,827 - HER17_RS03975 0.66 +0.2 894,905 + HER17_RS03975 0.78 -1.0 894,906 - HER17_RS03975 0.78 -0.6 894,997 - -0.3 895,052 + -0.7 895,052 + -0.8 895,052 + +1.4 895,053 - -2.3 895,062 + -0.3 895,063 - -1.7 895,071 + +0.3 895,071 + -0.6 895,076 - -0.6 895,098 - +1.8 895,098 - +1.1 895,098 - -0.7 895,098 - -0.0 895,122 + -0.3 895,122 + -0.7 895,122 + -0.5 895,122 + +0.7 895,122 + +0.2 895,122 + -1.2 895,123 - -0.0 895,123 - +0.3 895,123 - +0.6 895,124 + -1.3 895,125 - -1.4 895,139 + -0.3 895,139 + +0.1 895,140 - -0.7 895,146 - -0.2 895,146 - -0.4 895,150 + -0.0 895,150 + +0.4 895,151 - -0.4 895,151 - -0.7 895,151 - +0.8 895,151 - +0.3 895,157 + +0.3 895,203 + +0.4 895,204 - -1.2 895,223 + +0.6 895,223 + +0.3 895,223 + +1.1 895,230 - -1.0 895,232 + +0.5 895,233 - +0.6 895,289 + +0.4 895,289 + +0.4 895,324 + +1.3 895,324 + +1.4 895,336 + -0.4 895,337 - +0.5 895,337 - +0.8 895,337 - +0.1 895,337 - +0.2 895,337 - +0.2 895,337 - +0.7 895,337 - +2.0 895,338 + +1.2 895,338 + +0.6 895,338 + -1.0 895,339 - +0.4 895,339 - -0.3 895,346 - +2.0 895,346 - +0.1 895,377 + -1.5 895,377 + +1.5 895,377 + -1.2 895,378 - +0.7 895,396 + +0.3 895,397 - +1.3 895,472 + -0.7 895,532 + +1.5 895,532 + -0.5 895,532 + -1.2 895,533 - +0.8 895,533 - +1.2 895,597 + +0.8 895,597 + -1.2 895,621 + +1.5 895,622 - +0.6 895,622 - +2.0 895,622 - -0.5 895,622 - +0.8 895,625 + +0.8 895,625 + +0.9 895,626 - +0.3 895,626 - +0.4 895,626 - +2.4 895,716 + HER17_RS03980 0.12 +0.7 895,716 + HER17_RS03980 0.12 +0.8 895,716 + HER17_RS03980 0.12 -0.3 895,860 + HER17_RS03980 0.20 +0.1 895,861 - HER17_RS03980 0.20 +0.4 895,958 - HER17_RS03980 0.26 +0.1 895,968 + HER17_RS03980 0.26 +0.4
Or see this region's nucleotide sequence