Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03390 and HER17_RS03395 are separated by 56 nucleotides HER17_RS03395 and HER17_RS03400 are separated by 437 nucleotides HER17_RS03400 and HER17_RS03405 are separated by 11 nucleotides
HER17_RS03390: HER17_RS03390 - LacI family DNA-binding transcriptional regulator, at 770,896 to 772,086
_RS03390
HER17_RS03395: HER17_RS03395 - ABC transporter substrate-binding protein, at 772,143 to 773,204
_RS03395
HER17_RS03400: HER17_RS03400 - multidrug efflux SMR transporter, at 773,642 to 773,968
_RS03400
HER17_RS03405: HER17_RS03405 - multidrug efflux SMR transporter, at 773,980 to 774,402
_RS03405
Position (kb) 772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 771.229 kb on + strand, within HER17_RS03390 at 771.230 kb on - strand, within HER17_RS03390 at 771.230 kb on - strand, within HER17_RS03390 at 771.233 kb on + strand, within HER17_RS03390 at 771.234 kb on - strand, within HER17_RS03390 at 771.234 kb on - strand, within HER17_RS03390 at 771.403 kb on - strand, within HER17_RS03390 at 771.561 kb on + strand, within HER17_RS03390 at 771.612 kb on - strand, within HER17_RS03390 at 771.637 kb on + strand, within HER17_RS03390 at 771.637 kb on + strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.638 kb on - strand, within HER17_RS03390 at 771.639 kb on + strand, within HER17_RS03390 at 771.640 kb on - strand, within HER17_RS03390 at 771.651 kb on + strand, within HER17_RS03390 at 771.651 kb on + strand, within HER17_RS03390 at 771.712 kb on + strand, within HER17_RS03390 at 771.736 kb on - strand, within HER17_RS03390 at 771.736 kb on - strand, within HER17_RS03390 at 771.772 kb on + strand, within HER17_RS03390 at 771.791 kb on + strand, within HER17_RS03390 at 771.792 kb on - strand, within HER17_RS03390 at 771.820 kb on - strand, within HER17_RS03390 at 771.820 kb on - strand, within HER17_RS03390 at 771.825 kb on + strand, within HER17_RS03390 at 771.826 kb on - strand, within HER17_RS03390 at 772.084 kb on + strand at 772.085 kb on - strand at 772.120 kb on + strand at 772.121 kb on - strand at 772.121 kb on - strand at 772.144 kb on + strand at 772.144 kb on + strand at 772.145 kb on - strand at 772.145 kb on - strand at 772.166 kb on + strand at 772.167 kb on - strand at 772.167 kb on - strand at 772.417 kb on + strand, within HER17_RS03395 at 772.511 kb on + strand, within HER17_RS03395 at 772.511 kb on + strand, within HER17_RS03395 at 772.512 kb on - strand, within HER17_RS03395 at 772.520 kb on + strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.527 kb on - strand, within HER17_RS03395 at 772.640 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.654 kb on + strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.655 kb on - strand, within HER17_RS03395 at 772.661 kb on + strand, within HER17_RS03395 at 772.662 kb on - strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.752 kb on + strand, within HER17_RS03395 at 772.753 kb on - strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.784 kb on + strand, within HER17_RS03395 at 772.785 kb on - strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.795 kb on + strand, within HER17_RS03395 at 772.796 kb on - strand, within HER17_RS03395 at 772.808 kb on + strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.809 kb on - strand, within HER17_RS03395 at 772.830 kb on + strand, within HER17_RS03395 at 772.831 kb on - strand, within HER17_RS03395 at 772.950 kb on + strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.951 kb on - strand, within HER17_RS03395 at 772.954 kb on + strand, within HER17_RS03395 at 773.113 kb on - strand at 773.127 kb on + strand at 773.147 kb on + strand at 773.186 kb on + strand at 773.196 kb on - strand at 773.222 kb on + strand at 773.247 kb on + strand at 773.248 kb on - strand at 773.323 kb on - strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.327 kb on + strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.328 kb on - strand at 773.340 kb on + strand at 773.340 kb on + strand at 773.340 kb on + strand at 773.341 kb on - strand at 773.341 kb on - strand at 773.341 kb on - strand at 773.389 kb on - strand at 773.415 kb on - strand at 773.540 kb on - strand at 773.558 kb on - strand at 773.577 kb on - strand at 773.602 kb on + strand at 773.641 kb on - strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.643 kb on + strand at 773.647 kb on + strand at 773.647 kb on + strand at 773.648 kb on - strand at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.688 kb on - strand, within HER17_RS03400 at 773.781 kb on - strand, within HER17_RS03400 at 773.808 kb on + strand, within HER17_RS03400 at 773.885 kb on - strand, within HER17_RS03400 at 773.981 kb on + strand at 773.982 kb on - strand at 774.008 kb on - strand at 774.156 kb on + strand, within HER17_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 771,229 + HER17_RS03390 0.28 -0.1 771,230 - HER17_RS03390 0.28 -1.3 771,230 - HER17_RS03390 0.28 -1.9 771,233 + HER17_RS03390 0.28 -0.7 771,234 - HER17_RS03390 0.28 -0.6 771,234 - HER17_RS03390 0.28 -0.7 771,403 - HER17_RS03390 0.43 -1.6 771,561 + HER17_RS03390 0.56 -0.1 771,612 - HER17_RS03390 0.60 -1.4 771,637 + HER17_RS03390 0.62 -0.7 771,637 + HER17_RS03390 0.62 +0.3 771,638 - HER17_RS03390 0.62 -2.7 771,638 - HER17_RS03390 0.62 +0.3 771,638 - HER17_RS03390 0.62 +1.9 771,639 + HER17_RS03390 0.62 -0.0 771,640 - HER17_RS03390 0.62 -0.6 771,651 + HER17_RS03390 0.63 -0.7 771,651 + HER17_RS03390 0.63 -1.4 771,712 + HER17_RS03390 0.69 +0.0 771,736 - HER17_RS03390 0.71 -0.4 771,736 - HER17_RS03390 0.71 -0.9 771,772 + HER17_RS03390 0.74 -1.1 771,791 + HER17_RS03390 0.75 +0.6 771,792 - HER17_RS03390 0.75 +0.6 771,820 - HER17_RS03390 0.78 -0.0 771,820 - HER17_RS03390 0.78 -1.7 771,825 + HER17_RS03390 0.78 -0.7 771,826 - HER17_RS03390 0.78 -0.4 772,084 + +0.9 772,085 - +0.5 772,120 + -0.2 772,121 - +0.0 772,121 - +0.3 772,144 + -0.6 772,144 + -1.4 772,145 - -0.2 772,145 - +0.4 772,166 + +1.7 772,167 - +1.2 772,167 - -0.2 772,417 + HER17_RS03395 0.26 +0.9 772,511 + HER17_RS03395 0.35 -1.4 772,511 + HER17_RS03395 0.35 -1.6 772,512 - HER17_RS03395 0.35 -1.9 772,520 + HER17_RS03395 0.35 +0.9 772,527 - HER17_RS03395 0.36 -0.4 772,527 - HER17_RS03395 0.36 +0.6 772,527 - HER17_RS03395 0.36 +0.5 772,640 + HER17_RS03395 0.47 -0.4 772,654 + HER17_RS03395 0.48 +0.3 772,654 + HER17_RS03395 0.48 +0.1 772,655 - HER17_RS03395 0.48 -0.3 772,655 - HER17_RS03395 0.48 +0.9 772,655 - HER17_RS03395 0.48 +0.2 772,661 + HER17_RS03395 0.49 -0.4 772,662 - HER17_RS03395 0.49 -0.3 772,752 + HER17_RS03395 0.57 -0.0 772,752 + HER17_RS03395 0.57 +0.6 772,753 - HER17_RS03395 0.57 -0.4 772,784 + HER17_RS03395 0.60 -0.7 772,784 + HER17_RS03395 0.60 -0.7 772,785 - HER17_RS03395 0.60 +1.1 772,795 + HER17_RS03395 0.61 -1.4 772,795 + HER17_RS03395 0.61 -0.2 772,795 + HER17_RS03395 0.61 +2.2 772,795 + HER17_RS03395 0.61 +2.0 772,796 - HER17_RS03395 0.61 -1.9 772,808 + HER17_RS03395 0.63 +0.0 772,809 - HER17_RS03395 0.63 -0.6 772,809 - HER17_RS03395 0.63 -0.7 772,830 + HER17_RS03395 0.65 +0.7 772,831 - HER17_RS03395 0.65 -0.9 772,950 + HER17_RS03395 0.76 -0.4 772,951 - HER17_RS03395 0.76 -0.3 772,951 - HER17_RS03395 0.76 +1.0 772,954 + HER17_RS03395 0.76 +0.2 773,113 - +0.9 773,127 + -0.7 773,147 + -1.0 773,186 + +0.9 773,196 - +0.2 773,222 + +0.9 773,247 + +0.2 773,248 - +0.1 773,323 - +1.3 773,327 + +1.5 773,327 + -0.3 773,327 + +0.2 773,327 + +0.2 773,328 - +0.4 773,328 - +0.8 773,328 - -0.9 773,328 - +0.3 773,340 + -0.8 773,340 + +0.5 773,340 + -0.7 773,341 - -0.1 773,341 - -0.3 773,341 - -1.2 773,389 - -0.2 773,415 - -0.1 773,540 - -0.2 773,558 - -0.7 773,577 - +0.9 773,602 + +0.8 773,641 - +0.5 773,643 + -0.1 773,643 + +0.2 773,643 + -0.3 773,643 + -0.7 773,643 + -0.3 773,647 + +0.3 773,647 + -2.8 773,648 - +0.3 773,688 - HER17_RS03400 0.14 -0.0 773,688 - HER17_RS03400 0.14 -0.3 773,688 - HER17_RS03400 0.14 -1.7 773,781 - HER17_RS03400 0.43 +0.0 773,808 + HER17_RS03400 0.51 -1.4 773,885 - HER17_RS03400 0.74 -1.0 773,981 + -0.0 773,982 - -0.3 774,008 - -2.3 774,156 + HER17_RS03405 0.42 +0.0
Or see this region's nucleotide sequence