Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02815

Experiment: Tuber-Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS02810 and HER17_RS02815 are separated by 313 nucleotidesHER17_RS02815 and HER17_RS02820 are separated by 77 nucleotides HER17_RS02810: HER17_RS02810 - peroxide stress protein YaaA, at 630,606 to 631,379 _RS02810 HER17_RS02815: HER17_RS02815 - transaldolase, at 631,693 to 632,646 _RS02815 HER17_RS02820: HER17_RS02820 - GGDEF domain-containing protein, at 632,724 to 633,812 _RS02820 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 630.771 kb on + strand, within HER17_RS02810at 630.776 kb on + strand, within HER17_RS02810at 630.776 kb on + strand, within HER17_RS02810at 630.827 kb on + strand, within HER17_RS02810at 630.856 kb on + strand, within HER17_RS02810at 630.857 kb on - strand, within HER17_RS02810at 630.876 kb on - strand, within HER17_RS02810at 631.037 kb on - strand, within HER17_RS02810at 631.037 kb on - strand, within HER17_RS02810at 631.052 kb on + strand, within HER17_RS02810at 631.053 kb on - strand, within HER17_RS02810at 631.117 kb on + strand, within HER17_RS02810at 631.117 kb on + strand, within HER17_RS02810at 631.118 kb on - strand, within HER17_RS02810at 631.118 kb on - strand, within HER17_RS02810at 631.130 kb on + strand, within HER17_RS02810at 631.187 kb on + strand, within HER17_RS02810at 631.265 kb on + strand, within HER17_RS02810at 631.313 kb on + strandat 631.313 kb on + strandat 631.313 kb on + strandat 631.314 kb on - strandat 631.314 kb on - strandat 631.314 kb on - strandat 631.314 kb on - strandat 631.343 kb on - strandat 631.343 kb on - strandat 631.367 kb on + strandat 631.367 kb on + strandat 631.368 kb on - strandat 631.370 kb on + strandat 631.370 kb on + strandat 631.371 kb on - strandat 631.371 kb on - strandat 631.371 kb on - strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.374 kb on - strandat 631.374 kb on - strandat 631.374 kb on - strandat 631.374 kb on - strandat 631.415 kb on + strandat 631.415 kb on + strandat 631.415 kb on + strandat 631.415 kb on + strandat 631.416 kb on - strandat 631.416 kb on - strandat 631.416 kb on - strandat 631.416 kb on - strandat 631.418 kb on + strandat 631.420 kb on + strandat 631.420 kb on + strandat 631.420 kb on + strandat 631.420 kb on + strandat 631.421 kb on - strandat 631.421 kb on - strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.455 kb on - strandat 631.455 kb on - strandat 631.455 kb on - strandat 631.455 kb on - strandat 631.457 kb on + strandat 631.457 kb on + strandat 631.457 kb on + strandat 631.457 kb on + strandat 631.458 kb on - strandat 631.458 kb on - strandat 631.458 kb on - strandat 631.458 kb on - strandat 631.501 kb on + strandat 631.501 kb on + strandat 631.580 kb on + strandat 631.580 kb on + strandat 631.581 kb on - strandat 631.584 kb on - strandat 631.619 kb on + strandat 631.619 kb on + strandat 631.619 kb on + strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.623 kb on + strandat 631.623 kb on + strandat 631.624 kb on - strandat 631.624 kb on - strandat 631.639 kb on - strandat 631.639 kb on - strandat 631.639 kb on - strandat 631.640 kb on + strandat 631.640 kb on + strandat 631.641 kb on - strandat 631.641 kb on - strandat 631.641 kb on - strandat 631.641 kb on - strandat 631.648 kb on - strandat 631.648 kb on - strandat 631.648 kb on - strandat 631.670 kb on + strandat 631.670 kb on + strandat 631.670 kb on + strandat 631.671 kb on - strandat 631.673 kb on - strandat 631.701 kb on + strandat 631.736 kb on + strandat 631.736 kb on + strandat 631.737 kb on - strandat 631.772 kb on - strandat 631.999 kb on + strand, within HER17_RS02815at 631.999 kb on + strand, within HER17_RS02815at 631.999 kb on + strand, within HER17_RS02815at 632.000 kb on - strand, within HER17_RS02815at 632.000 kb on - strand, within HER17_RS02815at 632.000 kb on - strand, within HER17_RS02815at 632.047 kb on + strand, within HER17_RS02815at 632.047 kb on + strand, within HER17_RS02815at 632.048 kb on - strand, within HER17_RS02815at 632.048 kb on - strand, within HER17_RS02815at 632.077 kb on - strand, within HER17_RS02815at 632.151 kb on + strand, within HER17_RS02815at 632.151 kb on + strand, within HER17_RS02815at 632.248 kb on + strand, within HER17_RS02815at 632.320 kb on + strand, within HER17_RS02815at 632.326 kb on + strand, within HER17_RS02815at 632.326 kb on + strand, within HER17_RS02815at 632.327 kb on - strand, within HER17_RS02815at 632.327 kb on - strand, within HER17_RS02815at 632.329 kb on + strand, within HER17_RS02815at 632.330 kb on - strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.486 kb on - strand, within HER17_RS02815at 632.486 kb on - strand, within HER17_RS02815at 632.536 kb on + strand, within HER17_RS02815at 632.537 kb on - strand, within HER17_RS02815at 632.537 kb on - strand, within HER17_RS02815at 632.571 kb on + strandat 632.572 kb on - strandat 632.592 kb on + strandat 632.593 kb on - strandat 632.593 kb on - strandat 632.645 kb on - strandat 632.697 kb on + strandat 632.698 kb on - strandat 632.719 kb on + strandat 632.719 kb on + strandat 632.720 kb on - strandat 632.720 kb on - strandat 632.720 kb on - strandat 632.720 kb on - strandat 632.726 kb on - strandat 632.762 kb on - strandat 632.768 kb on + strandat 632.796 kb on + strandat 632.797 kb on - strandat 632.810 kb on + strandat 632.810 kb on + strandat 632.811 kb on - strandat 632.811 kb on - strandat 632.813 kb on + strandat 632.814 kb on - strandat 632.814 kb on - strandat 632.819 kb on - strandat 632.819 kb on - strandat 632.819 kb on - strandat 632.885 kb on + strand, within HER17_RS02820at 632.886 kb on - strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.936 kb on + strand, within HER17_RS02820at 632.972 kb on + strand, within HER17_RS02820at 632.973 kb on - strand, within HER17_RS02820at 633.062 kb on + strand, within HER17_RS02820at 633.063 kb on - strand, within HER17_RS02820at 633.077 kb on + strand, within HER17_RS02820at 633.077 kb on + strand, within HER17_RS02820at 633.077 kb on + strand, within HER17_RS02820at 633.078 kb on - strand, within HER17_RS02820at 633.083 kb on - strand, within HER17_RS02820at 633.147 kb on - strand, within HER17_RS02820at 633.178 kb on - strand, within HER17_RS02820at 633.253 kb on - strand, within HER17_RS02820at 633.276 kb on + strand, within HER17_RS02820at 633.284 kb on + strand, within HER17_RS02820at 633.284 kb on + strand, within HER17_RS02820at 633.285 kb on - strand, within HER17_RS02820at 633.363 kb on - strand, within HER17_RS02820at 633.371 kb on + strand, within HER17_RS02820at 633.372 kb on - strand, within HER17_RS02820at 633.375 kb on + strand, within HER17_RS02820at 633.376 kb on - strand, within HER17_RS02820at 633.417 kb on - strand, within HER17_RS02820at 633.417 kb on - strand, within HER17_RS02820at 633.436 kb on + strand, within HER17_RS02820at 633.459 kb on - strand, within HER17_RS02820at 633.470 kb on + strand, within HER17_RS02820at 633.471 kb on - strand, within HER17_RS02820at 633.492 kb on - strand, within HER17_RS02820at 633.492 kb on - strand, within HER17_RS02820at 633.513 kb on + strand, within HER17_RS02820at 633.514 kb on - strand, within HER17_RS02820at 633.525 kb on - strand, within HER17_RS02820at 633.525 kb on - strand, within HER17_RS02820at 633.525 kb on - strand, within HER17_RS02820at 633.537 kb on + strand, within HER17_RS02820at 633.537 kb on + strand, within HER17_RS02820at 633.538 kb on - strand, within HER17_RS02820at 633.538 kb on - strand, within HER17_RS02820at 633.538 kb on - strand, within HER17_RS02820at 633.549 kb on - strand, within HER17_RS02820at 633.551 kb on + strand, within HER17_RS02820at 633.552 kb on - strand, within HER17_RS02820at 633.552 kb on - strand, within HER17_RS02820at 633.552 kb on - strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.632 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.646 kb on + strand, within HER17_RS02820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
remove
630,771 + HER17_RS02810 0.21 -3.0
630,776 + HER17_RS02810 0.22 +1.7
630,776 + HER17_RS02810 0.22 -1.0
630,827 + HER17_RS02810 0.29 -0.3
630,856 + HER17_RS02810 0.32 -1.8
630,857 - HER17_RS02810 0.32 +0.1
630,876 - HER17_RS02810 0.35 +0.1
631,037 - HER17_RS02810 0.56 -0.8
631,037 - HER17_RS02810 0.56 -1.1
631,052 + HER17_RS02810 0.58 -0.0
631,053 - HER17_RS02810 0.58 -1.0
631,117 + HER17_RS02810 0.66 -1.1
631,117 + HER17_RS02810 0.66 +0.0
631,118 - HER17_RS02810 0.66 +0.1
631,118 - HER17_RS02810 0.66 -0.4
631,130 + HER17_RS02810 0.68 -0.6
631,187 + HER17_RS02810 0.75 +0.4
631,265 + HER17_RS02810 0.85 +0.3
631,313 + +0.9
631,313 + -0.1
631,313 + +1.6
631,314 - -0.3
631,314 - +0.1
631,314 - +0.9
631,314 - +0.0
631,343 - +0.3
631,343 - +0.6
631,367 + -0.2
631,367 + -0.3
631,368 - -0.4
631,370 + +2.4
631,370 + -1.1
631,371 - +0.7
631,371 - +0.7
631,371 - +0.9
631,373 + -1.7
631,373 + -0.5
631,373 + +0.1
631,373 + -1.4
631,373 + -0.0
631,374 - -0.1
631,374 - +0.3
631,374 - +0.4
631,374 - +2.6
631,415 + +0.2
631,415 + -0.2
631,415 + +0.0
631,415 + -1.1
631,416 - -0.2
631,416 - -0.9
631,416 - -1.1
631,416 - -1.4
631,418 + +0.4
631,420 + -0.1
631,420 + -0.3
631,420 + -0.1
631,420 + +0.4
631,421 - -0.7
631,421 - -1.2
631,452 + -0.9
631,452 + +2.1
631,452 + +0.3
631,452 + -0.5
631,452 + +1.1
631,453 - -0.1
631,453 - -0.9
631,453 - +0.0
631,453 - +3.0
631,453 - +0.7
631,453 - +0.0
631,453 - -2.3
631,453 - +0.5
631,454 + -0.0
631,454 + +0.2
631,454 + +0.5
631,454 + +0.2
631,454 + +2.2
631,454 + +1.1
631,455 - -1.0
631,455 - +0.8
631,455 - +0.2
631,455 - -0.7
631,457 + +0.6
631,457 + -1.3
631,457 + -1.3
631,457 + -0.3
631,458 - +0.2
631,458 - +1.0
631,458 - +0.0
631,458 - -0.1
631,501 + -1.1
631,501 + -2.3
631,580 + +0.0
631,580 + -0.2
631,581 - +0.3
631,584 - +0.7
631,619 + -0.1
631,619 + -0.8
631,619 + +0.4
631,620 - -1.7
631,620 - -1.1
631,620 - +1.3
631,620 - -0.3
631,620 - -0.9
631,623 + -0.1
631,623 + -0.7
631,624 - -0.6
631,624 - -0.7
631,639 - -0.4
631,639 - +0.7
631,639 - +0.7
631,640 + -1.1
631,640 + +1.3
631,641 - -0.1
631,641 - -0.5
631,641 - +0.3
631,641 - -0.4
631,648 - -0.5
631,648 - -1.4
631,648 - -1.9
631,670 + -0.1
631,670 + +0.1
631,670 + -0.6
631,671 - -0.1
631,673 - -0.5
631,701 + -0.9
631,736 + +0.9
631,736 + -0.9
631,737 - -0.8
631,772 - +1.3
631,999 + HER17_RS02815 0.32 +0.2
631,999 + HER17_RS02815 0.32 -0.3
631,999 + HER17_RS02815 0.32 -1.7
632,000 - HER17_RS02815 0.32 +1.7
632,000 - HER17_RS02815 0.32 -1.4
632,000 - HER17_RS02815 0.32 -1.1
632,047 + HER17_RS02815 0.37 +0.4
632,047 + HER17_RS02815 0.37 +0.9
632,048 - HER17_RS02815 0.37 -1.1
632,048 - HER17_RS02815 0.37 -0.2
632,077 - HER17_RS02815 0.40 +0.2
632,151 + HER17_RS02815 0.48 -1.1
632,151 + HER17_RS02815 0.48 +0.1
632,248 + HER17_RS02815 0.58 -0.9
632,320 + HER17_RS02815 0.66 +1.9
632,326 + HER17_RS02815 0.66 -0.7
632,326 + HER17_RS02815 0.66 -0.7
632,327 - HER17_RS02815 0.66 -2.4
632,327 - HER17_RS02815 0.66 +0.2
632,329 + HER17_RS02815 0.67 -1.1
632,330 - HER17_RS02815 0.67 -1.9
632,485 + HER17_RS02815 0.83 -0.1
632,485 + HER17_RS02815 0.83 -0.7
632,485 + HER17_RS02815 0.83 -2.4
632,485 + HER17_RS02815 0.83 -0.4
632,486 - HER17_RS02815 0.83 -0.1
632,486 - HER17_RS02815 0.83 +1.2
632,536 + HER17_RS02815 0.88 -1.4
632,537 - HER17_RS02815 0.88 -0.4
632,537 - HER17_RS02815 0.88 -0.7
632,571 + +1.7
632,572 - -0.6
632,592 + -2.1
632,593 - -0.3
632,593 - +0.5
632,645 - +1.1
632,697 + +0.4
632,698 - +0.2
632,719 + +0.5
632,719 + -2.1
632,720 - +0.3
632,720 - +1.6
632,720 - +0.9
632,720 - -0.3
632,726 - -0.5
632,762 - +0.9
632,768 + -0.9
632,796 + +1.8
632,797 - -1.7
632,810 + -0.5
632,810 + +1.0
632,811 - +0.4
632,811 - -1.1
632,813 + -1.7
632,814 - -0.3
632,814 - +0.9
632,819 - +0.5
632,819 - +0.1
632,819 - +0.8
632,885 + HER17_RS02820 0.15 +1.4
632,886 - HER17_RS02820 0.15 -0.9
632,915 + HER17_RS02820 0.18 -0.0
632,915 + HER17_RS02820 0.18 +0.8
632,915 + HER17_RS02820 0.18 -0.1
632,915 + HER17_RS02820 0.18 +0.7
632,915 + HER17_RS02820 0.18 +1.1
632,915 + HER17_RS02820 0.18 +0.5
632,915 + HER17_RS02820 0.18 +1.1
632,915 + HER17_RS02820 0.18 -0.7
632,916 - HER17_RS02820 0.18 +1.6
632,916 - HER17_RS02820 0.18 -2.9
632,916 - HER17_RS02820 0.18 +1.4
632,916 - HER17_RS02820 0.18 -0.1
632,916 - HER17_RS02820 0.18 +0.1
632,916 - HER17_RS02820 0.18 +0.0
632,917 + HER17_RS02820 0.18 +0.3
632,917 + HER17_RS02820 0.18 -0.4
632,917 + HER17_RS02820 0.18 -0.4
632,917 + HER17_RS02820 0.18 -2.6
632,917 + HER17_RS02820 0.18 +1.0
632,917 + HER17_RS02820 0.18 +0.2
632,917 + HER17_RS02820 0.18 -2.7
632,917 + HER17_RS02820 0.18 +0.6
632,917 + HER17_RS02820 0.18 +2.0
632,917 + HER17_RS02820 0.18 +1.0
632,917 + HER17_RS02820 0.18 +0.3
632,917 + HER17_RS02820 0.18 -1.9
632,918 - HER17_RS02820 0.18 +0.3
632,918 - HER17_RS02820 0.18 -0.3
632,918 - HER17_RS02820 0.18 +0.6
632,918 - HER17_RS02820 0.18 -1.1
632,918 - HER17_RS02820 0.18 +1.0
632,918 - HER17_RS02820 0.18 -0.7
632,918 - HER17_RS02820 0.18 -0.5
632,918 - HER17_RS02820 0.18 +0.4
632,918 - HER17_RS02820 0.18 +0.3
632,918 - HER17_RS02820 0.18 -0.6
632,918 - HER17_RS02820 0.18 +0.9
632,936 + HER17_RS02820 0.19 +0.9
632,972 + HER17_RS02820 0.23 +0.2
632,973 - HER17_RS02820 0.23 +0.8
633,062 + HER17_RS02820 0.31 -0.7
633,063 - HER17_RS02820 0.31 +0.3
633,077 + HER17_RS02820 0.32 -0.5
633,077 + HER17_RS02820 0.32 -1.1
633,077 + HER17_RS02820 0.32 +2.8
633,078 - HER17_RS02820 0.33 +0.3
633,083 - HER17_RS02820 0.33 -0.3
633,147 - HER17_RS02820 0.39 +0.1
633,178 - HER17_RS02820 0.42 -0.2
633,253 - HER17_RS02820 0.49 +1.9
633,276 + HER17_RS02820 0.51 -0.3
633,284 + HER17_RS02820 0.51 -0.4
633,284 + HER17_RS02820 0.51 +0.2
633,285 - HER17_RS02820 0.52 +0.4
633,363 - HER17_RS02820 0.59 +1.5
633,371 + HER17_RS02820 0.59 -0.6
633,372 - HER17_RS02820 0.60 +2.2
633,375 + HER17_RS02820 0.60 -0.3
633,376 - HER17_RS02820 0.60 -0.5
633,417 - HER17_RS02820 0.64 -0.6
633,417 - HER17_RS02820 0.64 -0.0
633,436 + HER17_RS02820 0.65 +0.6
633,459 - HER17_RS02820 0.67 -0.2
633,470 + HER17_RS02820 0.69 -1.1
633,471 - HER17_RS02820 0.69 +0.5
633,492 - HER17_RS02820 0.71 -0.9
633,492 - HER17_RS02820 0.71 -0.7
633,513 + HER17_RS02820 0.72 -0.4
633,514 - HER17_RS02820 0.73 +0.2
633,525 - HER17_RS02820 0.74 +1.1
633,525 - HER17_RS02820 0.74 -0.6
633,525 - HER17_RS02820 0.74 +0.3
633,537 + HER17_RS02820 0.75 -0.3
633,537 + HER17_RS02820 0.75 +0.8
633,538 - HER17_RS02820 0.75 +1.2
633,538 - HER17_RS02820 0.75 +2.1
633,538 - HER17_RS02820 0.75 +1.7
633,549 - HER17_RS02820 0.76 -1.4
633,551 + HER17_RS02820 0.76 -1.0
633,552 - HER17_RS02820 0.76 -0.5
633,552 - HER17_RS02820 0.76 +0.4
633,552 - HER17_RS02820 0.76 -0.5
633,583 + HER17_RS02820 0.79 +0.5
633,583 + HER17_RS02820 0.79 -0.3
633,583 + HER17_RS02820 0.79 -0.9
633,583 + HER17_RS02820 0.79 +1.5
633,584 - HER17_RS02820 0.79 +0.1
633,584 - HER17_RS02820 0.79 +0.9
633,584 - HER17_RS02820 0.79 +0.5
633,584 - HER17_RS02820 0.79 -0.5
633,632 + HER17_RS02820 0.83 -0.3
633,637 + HER17_RS02820 0.84 -0.5
633,637 + HER17_RS02820 0.84 -0.3
633,637 + HER17_RS02820 0.84 +0.8
633,637 + HER17_RS02820 0.84 +0.6
633,646 + HER17_RS02820 0.85 -0.6

Or see this region's nucleotide sequence