Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02210 and HER17_RS02215 are separated by 56 nucleotides HER17_RS02215 and HER17_RS02220 are separated by 67 nucleotides
HER17_RS02210: HER17_RS02210 - Trk system potassium transporter TrkA, at 491,269 to 492,645
_RS02210
HER17_RS02215: HER17_RS02215 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 492,702 to 493,991
_RS02215
HER17_RS02220: HER17_RS02220 - methionyl-tRNA formyltransferase, at 494,059 to 495,006
_RS02220
Position (kb) 492
493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 491.994 kb on + strand, within HER17_RS02210 at 491.995 kb on - strand, within HER17_RS02210 at 492.104 kb on - strand, within HER17_RS02210 at 492.161 kb on + strand, within HER17_RS02210 at 492.162 kb on - strand, within HER17_RS02210 at 492.164 kb on + strand, within HER17_RS02210 at 492.164 kb on + strand, within HER17_RS02210 at 492.165 kb on - strand, within HER17_RS02210 at 492.172 kb on - strand, within HER17_RS02210 at 492.193 kb on - strand, within HER17_RS02210 at 492.646 kb on - strand at 492.648 kb on + strand at 492.648 kb on + strand at 492.648 kb on + strand at 492.649 kb on - strand at 492.701 kb on - strand at 492.765 kb on + strand at 492.765 kb on + strand at 492.765 kb on + strand at 492.766 kb on - strand at 492.766 kb on - strand at 492.767 kb on + strand at 492.767 kb on + strand at 492.767 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.785 kb on + strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.786 kb on - strand at 492.822 kb on + strand at 492.872 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.877 kb on + strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.878 kb on - strand, within HER17_RS02215 at 492.905 kb on - strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.956 kb on + strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.957 kb on - strand, within HER17_RS02215 at 492.980 kb on + strand, within HER17_RS02215 at 492.980 kb on + strand, within HER17_RS02215 at 492.980 kb on + strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 492.981 kb on - strand, within HER17_RS02215 at 493.095 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.158 kb on + strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.159 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.174 kb on - strand, within HER17_RS02215 at 493.202 kb on + strand, within HER17_RS02215 at 493.203 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.303 kb on - strand, within HER17_RS02215 at 493.378 kb on + strand, within HER17_RS02215 at 493.413 kb on + strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.414 kb on - strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.416 kb on + strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.417 kb on - strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.429 kb on + strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.430 kb on - strand, within HER17_RS02215 at 493.464 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.502 kb on + strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.503 kb on - strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.626 kb on + strand, within HER17_RS02215 at 493.629 kb on + strand, within HER17_RS02215 at 493.630 kb on - strand, within HER17_RS02215 at 493.683 kb on + strand, within HER17_RS02215 at 493.721 kb on + strand, within HER17_RS02215 at 493.723 kb on + strand, within HER17_RS02215 at 493.736 kb on - strand, within HER17_RS02215 at 493.756 kb on + strand, within HER17_RS02215 at 493.757 kb on - strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.775 kb on + strand, within HER17_RS02215 at 493.790 kb on + strand, within HER17_RS02215 at 493.791 kb on - strand, within HER17_RS02215 at 493.808 kb on + strand, within HER17_RS02215 at 493.836 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.839 kb on + strand, within HER17_RS02215 at 493.905 kb on + strand at 493.905 kb on + strand at 493.905 kb on + strand at 493.906 kb on - strand at 493.908 kb on + strand at 493.909 kb on - strand at 493.909 kb on - strand at 493.964 kb on + strand at 493.965 kb on - strand at 493.965 kb on - strand at 493.971 kb on + strand at 493.972 kb on - strand at 493.972 kb on - strand at 493.978 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.007 kb on + strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.008 kb on - strand at 494.009 kb on + strand at 494.009 kb on + strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.010 kb on - strand at 494.013 kb on + strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.014 kb on - strand at 494.027 kb on + strand at 494.028 kb on - strand at 494.028 kb on - strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.029 kb on + strand at 494.060 kb on + strand at 494.060 kb on + strand at 494.061 kb on - strand at 494.070 kb on + strand at 494.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 491,994 + HER17_RS02210 0.53 +0.9 491,995 - HER17_RS02210 0.53 +0.9 492,104 - HER17_RS02210 0.61 -1.1 492,161 + HER17_RS02210 0.65 -0.1 492,162 - HER17_RS02210 0.65 -0.7 492,164 + HER17_RS02210 0.65 -1.4 492,164 + HER17_RS02210 0.65 -0.7 492,165 - HER17_RS02210 0.65 -2.3 492,172 - HER17_RS02210 0.66 +0.5 492,193 - HER17_RS02210 0.67 +0.1 492,646 - -0.4 492,648 + -0.1 492,648 + +0.9 492,648 + +1.9 492,649 - -0.3 492,701 - +0.2 492,765 + -1.7 492,765 + -0.1 492,765 + -2.8 492,766 - -0.8 492,766 - -0.2 492,767 + -1.1 492,767 + -0.1 492,767 + -2.3 492,785 + -2.1 492,785 + +1.6 492,785 + -1.6 492,785 + -0.0 492,785 + -0.6 492,785 + -0.1 492,786 - -0.2 492,786 - -0.7 492,786 - +0.6 492,786 - +0.2 492,786 - +0.5 492,822 + -1.0 492,872 + HER17_RS02215 0.13 -2.3 492,877 + HER17_RS02215 0.14 +1.1 492,877 + HER17_RS02215 0.14 +0.9 492,877 + HER17_RS02215 0.14 +0.2 492,877 + HER17_RS02215 0.14 -1.7 492,877 + HER17_RS02215 0.14 +0.9 492,877 + HER17_RS02215 0.14 -0.2 492,877 + HER17_RS02215 0.14 -0.7 492,878 - HER17_RS02215 0.14 +1.3 492,878 - HER17_RS02215 0.14 -1.3 492,878 - HER17_RS02215 0.14 -0.8 492,878 - HER17_RS02215 0.14 -0.8 492,905 - HER17_RS02215 0.16 +0.3 492,956 + HER17_RS02215 0.20 -0.8 492,956 + HER17_RS02215 0.20 -0.7 492,956 + HER17_RS02215 0.20 +0.4 492,956 + HER17_RS02215 0.20 +0.3 492,957 - HER17_RS02215 0.20 -0.9 492,957 - HER17_RS02215 0.20 -0.5 492,957 - HER17_RS02215 0.20 -0.2 492,957 - HER17_RS02215 0.20 +2.9 492,957 - HER17_RS02215 0.20 +0.4 492,980 + HER17_RS02215 0.22 -0.1 492,980 + HER17_RS02215 0.22 -1.9 492,980 + HER17_RS02215 0.22 +0.5 492,981 - HER17_RS02215 0.22 -1.4 492,981 - HER17_RS02215 0.22 -0.5 492,981 - HER17_RS02215 0.22 +0.5 492,981 - HER17_RS02215 0.22 -0.1 492,981 - HER17_RS02215 0.22 +2.8 492,981 - HER17_RS02215 0.22 -0.4 492,981 - HER17_RS02215 0.22 +1.6 493,095 + HER17_RS02215 0.30 -1.7 493,158 + HER17_RS02215 0.35 -0.2 493,158 + HER17_RS02215 0.35 +0.1 493,159 - HER17_RS02215 0.35 -1.1 493,159 - HER17_RS02215 0.35 -3.8 493,159 - HER17_RS02215 0.35 -1.6 493,159 - HER17_RS02215 0.35 -0.3 493,159 - HER17_RS02215 0.35 +0.9 493,174 - HER17_RS02215 0.37 -0.7 493,174 - HER17_RS02215 0.37 -1.1 493,202 + HER17_RS02215 0.39 -3.3 493,203 - HER17_RS02215 0.39 -1.9 493,303 - HER17_RS02215 0.47 -0.2 493,303 - HER17_RS02215 0.47 -0.1 493,303 - HER17_RS02215 0.47 +0.4 493,378 + HER17_RS02215 0.52 +0.1 493,413 + HER17_RS02215 0.55 +0.6 493,414 - HER17_RS02215 0.55 +0.2 493,414 - HER17_RS02215 0.55 -0.5 493,416 + HER17_RS02215 0.55 -0.5 493,416 + HER17_RS02215 0.55 +1.6 493,417 - HER17_RS02215 0.55 -1.9 493,417 - HER17_RS02215 0.55 -0.8 493,429 + HER17_RS02215 0.56 -1.3 493,429 + HER17_RS02215 0.56 -0.5 493,430 - HER17_RS02215 0.56 -0.1 493,430 - HER17_RS02215 0.56 -0.1 493,430 - HER17_RS02215 0.56 +0.3 493,464 + HER17_RS02215 0.59 -0.4 493,502 + HER17_RS02215 0.62 -2.6 493,502 + HER17_RS02215 0.62 +0.9 493,502 + HER17_RS02215 0.62 -2.0 493,503 - HER17_RS02215 0.62 +0.4 493,503 - HER17_RS02215 0.62 -0.3 493,626 + HER17_RS02215 0.72 +0.8 493,626 + HER17_RS02215 0.72 -0.1 493,629 + HER17_RS02215 0.72 -0.3 493,630 - HER17_RS02215 0.72 -0.6 493,683 + HER17_RS02215 0.76 -0.9 493,721 + HER17_RS02215 0.79 -1.0 493,723 + HER17_RS02215 0.79 -0.1 493,736 - HER17_RS02215 0.80 -0.1 493,756 + HER17_RS02215 0.82 -0.1 493,757 - HER17_RS02215 0.82 -1.1 493,775 + HER17_RS02215 0.83 +0.9 493,775 + HER17_RS02215 0.83 +1.6 493,775 + HER17_RS02215 0.83 -0.6 493,790 + HER17_RS02215 0.84 +0.0 493,791 - HER17_RS02215 0.84 +0.0 493,808 + HER17_RS02215 0.86 -1.2 493,836 + HER17_RS02215 0.88 -0.1 493,839 + HER17_RS02215 0.88 -1.4 493,839 + HER17_RS02215 0.88 -0.1 493,839 + HER17_RS02215 0.88 -0.9 493,905 + -0.2 493,905 + -1.3 493,905 + +0.7 493,906 - -0.9 493,908 + -0.4 493,909 - +0.6 493,909 - -1.1 493,964 + -0.5 493,965 - +1.1 493,965 - +0.9 493,971 + -0.9 493,972 - +0.9 493,972 - -2.0 493,978 + +0.2 494,007 + +0.6 494,007 + +0.3 494,007 + -0.0 494,007 + +0.1 494,007 + -0.1 494,007 + -1.7 494,007 + -0.7 494,007 + -1.1 494,008 - +0.9 494,008 - -1.1 494,008 - -0.4 494,008 - +0.6 494,008 - +0.2 494,009 + -0.9 494,009 + +0.9 494,010 - +0.2 494,010 - +0.5 494,010 - +0.7 494,010 - +1.2 494,010 - +0.2 494,013 + -2.8 494,014 - -0.5 494,014 - -1.9 494,014 - +0.5 494,014 - -0.1 494,027 + -0.4 494,028 - -1.5 494,028 - +1.9 494,029 + +1.2 494,029 + -0.9 494,029 + +1.7 494,029 + -1.4 494,060 + +1.1 494,060 + -2.4 494,061 - +0.7 494,070 + +0.3 494,071 - +0.5
Or see this region's nucleotide sequence