Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01160

Experiment: Tuber-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01155 and HER17_RS01160 are separated by 125 nucleotidesHER17_RS01160 and HER17_RS01165 overlap by 10 nucleotides HER17_RS01155: HER17_RS01155 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 269,347 to 270,465 _RS01155 HER17_RS01160: HER17_RS01160 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 270,591 to 271,853 _RS01160 HER17_RS01165: HER17_RS01165 - dTDP-glucose 4,6-dehydratase, at 271,844 to 272,917 _RS01165 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 269.621 kb on + strand, within HER17_RS01155at 269.621 kb on + strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.622 kb on - strand, within HER17_RS01155at 269.669 kb on - strand, within HER17_RS01155at 269.676 kb on + strand, within HER17_RS01155at 269.694 kb on - strand, within HER17_RS01155at 269.709 kb on + strand, within HER17_RS01155at 269.722 kb on + strand, within HER17_RS01155at 269.723 kb on - strand, within HER17_RS01155at 269.746 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.777 kb on - strand, within HER17_RS01155at 269.841 kb on + strand, within HER17_RS01155at 269.856 kb on + strand, within HER17_RS01155at 269.859 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.927 kb on + strand, within HER17_RS01155at 269.938 kb on + strand, within HER17_RS01155at 270.062 kb on + strand, within HER17_RS01155at 270.063 kb on - strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.093 kb on + strand, within HER17_RS01155at 270.136 kb on - strand, within HER17_RS01155at 270.163 kb on + strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.164 kb on - strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.178 kb on + strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.179 kb on - strand, within HER17_RS01155at 270.196 kb on + strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.197 kb on - strand, within HER17_RS01155at 270.320 kb on + strand, within HER17_RS01155at 270.321 kb on - strand, within HER17_RS01155at 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.357 kb on + strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.358 kb on - strandat 270.382 kb on + strandat 270.412 kb on + strandat 270.464 kb on - strandat 270.538 kb on + strandat 270.539 kb on - strandat 270.539 kb on - strandat 270.542 kb on + strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.543 kb on - strandat 270.570 kb on + strandat 270.578 kb on - strandat 270.590 kb on + strandat 270.590 kb on + strandat 270.590 kb on + strandat 270.591 kb on - strandat 270.591 kb on - strandat 270.591 kb on - strandat 270.599 kb on + strandat 270.600 kb on - strandat 270.603 kb on - strandat 270.879 kb on + strand, within HER17_RS01160at 270.879 kb on + strand, within HER17_RS01160at 271.050 kb on - strand, within HER17_RS01160at 271.104 kb on - strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.164 kb on + strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.165 kb on - strand, within HER17_RS01160at 271.196 kb on + strand, within HER17_RS01160at 271.199 kb on + strand, within HER17_RS01160at 271.309 kb on + strand, within HER17_RS01160at 271.309 kb on + strand, within HER17_RS01160at 271.310 kb on - strand, within HER17_RS01160at 271.310 kb on - strand, within HER17_RS01160at 271.352 kb on + strand, within HER17_RS01160at 271.353 kb on - strand, within HER17_RS01160at 271.449 kb on - strand, within HER17_RS01160at 271.518 kb on + strand, within HER17_RS01160at 271.554 kb on - strand, within HER17_RS01160at 271.625 kb on + strand, within HER17_RS01160at 271.625 kb on + strand, within HER17_RS01160at 271.741 kb on + strandat 271.762 kb on + strandat 271.762 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
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269,621 + HER17_RS01155 0.24 -1.8
269,621 + HER17_RS01155 0.24 +0.9
269,622 - HER17_RS01155 0.25 -0.6
269,622 - HER17_RS01155 0.25 -0.4
269,669 - HER17_RS01155 0.29 -1.2
269,676 + HER17_RS01155 0.29 +0.3
269,694 - HER17_RS01155 0.31 +0.6
269,709 + HER17_RS01155 0.32 -0.0
269,722 + HER17_RS01155 0.34 +0.9
269,723 - HER17_RS01155 0.34 -0.4
269,746 - HER17_RS01155 0.36 -0.8
269,777 - HER17_RS01155 0.38 -1.1
269,777 - HER17_RS01155 0.38 -1.7
269,777 - HER17_RS01155 0.38 -1.0
269,777 - HER17_RS01155 0.38 +0.2
269,841 + HER17_RS01155 0.44 +0.7
269,856 + HER17_RS01155 0.45 +0.5
269,859 + HER17_RS01155 0.46 +0.2
269,927 + HER17_RS01155 0.52 +0.2
269,927 + HER17_RS01155 0.52 +0.5
269,938 + HER17_RS01155 0.53 +0.1
270,062 + HER17_RS01155 0.64 +0.1
270,063 - HER17_RS01155 0.64 -0.2
270,093 + HER17_RS01155 0.67 -1.2
270,093 + HER17_RS01155 0.67 -0.7
270,136 - HER17_RS01155 0.71 -0.4
270,163 + HER17_RS01155 0.73 +2.2
270,164 - HER17_RS01155 0.73 -0.5
270,164 - HER17_RS01155 0.73 -1.8
270,178 + HER17_RS01155 0.74 -1.2
270,178 + HER17_RS01155 0.74 +0.6
270,178 + HER17_RS01155 0.74 -0.4
270,179 - HER17_RS01155 0.74 -1.0
270,179 - HER17_RS01155 0.74 -0.8
270,196 + HER17_RS01155 0.76 +0.2
270,197 - HER17_RS01155 0.76 -0.7
270,197 - HER17_RS01155 0.76 -1.9
270,197 - HER17_RS01155 0.76 -0.1
270,197 - HER17_RS01155 0.76 -0.6
270,197 - HER17_RS01155 0.76 -2.4
270,320 + HER17_RS01155 0.87 -1.4
270,321 - HER17_RS01155 0.87 -0.3
270,357 + -0.8
270,357 + +0.9
270,357 + -2.4
270,357 + -0.7
270,357 + -0.4
270,358 - +1.1
270,358 - +0.1
270,358 - -0.5
270,358 - +0.1
270,358 - +3.4
270,358 - -0.9
270,358 - +1.1
270,358 - -0.5
270,382 + +0.5
270,412 + -1.6
270,464 - -0.6
270,538 + +1.3
270,539 - +0.2
270,539 - -1.1
270,542 + -1.0
270,543 - -0.4
270,543 - +0.5
270,543 - +0.8
270,543 - -0.6
270,570 + +0.1
270,578 - +0.0
270,590 + +0.2
270,590 + +0.6
270,590 + +0.7
270,591 - +0.5
270,591 - -0.1
270,591 - -0.0
270,599 + -1.8
270,600 - -1.4
270,603 - +0.0
270,879 + HER17_RS01160 0.23 +0.5
270,879 + HER17_RS01160 0.23 +0.4
271,050 - HER17_RS01160 0.36 -0.1
271,104 - HER17_RS01160 0.41 +0.1
271,164 + HER17_RS01160 0.45 +1.6
271,164 + HER17_RS01160 0.45 -0.0
271,164 + HER17_RS01160 0.45 -0.6
271,164 + HER17_RS01160 0.45 +1.3
271,165 - HER17_RS01160 0.45 +0.4
271,165 - HER17_RS01160 0.45 -1.9
271,165 - HER17_RS01160 0.45 -3.6
271,165 - HER17_RS01160 0.45 +0.8
271,165 - HER17_RS01160 0.45 -1.2
271,165 - HER17_RS01160 0.45 -0.3
271,196 + HER17_RS01160 0.48 -0.1
271,199 + HER17_RS01160 0.48 -0.5
271,309 + HER17_RS01160 0.57 -2.4
271,309 + HER17_RS01160 0.57 -1.3
271,310 - HER17_RS01160 0.57 -1.2
271,310 - HER17_RS01160 0.57 +1.0
271,352 + HER17_RS01160 0.60 +0.5
271,353 - HER17_RS01160 0.60 +0.5
271,449 - HER17_RS01160 0.68 -0.1
271,518 + HER17_RS01160 0.73 -1.6
271,554 - HER17_RS01160 0.76 -0.8
271,625 + HER17_RS01160 0.82 +0.4
271,625 + HER17_RS01160 0.82 -0.4
271,741 + -0.4
271,762 + -0.4
271,762 + -0.2

Or see this region's nucleotide sequence